Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   M3709_RS08690 Genome accession   NZ_CP097333
Coordinates   1780921..1782234 (+) Length   437 a.a.
NCBI ID   WP_040080997.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain 184     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1775921..1787234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3709_RS08665 (M3709_08665) - 1776084..1778648 (-) 2565 WP_021280120.1 penicillin-binding protein 1A -
  M3709_RS08670 (M3709_08670) - 1778763..1779461 (+) 699 WP_006247933.1 hypothetical protein -
  M3709_RS08675 (M3709_08675) - 1779437..1779958 (+) 522 WP_040080995.1 hypothetical protein -
  M3709_RS08680 (M3709_08680) - 1779960..1780496 (+) 537 WP_006247935.1 hypothetical protein -
  M3709_RS08685 (M3709_08685) - 1780499..1780912 (+) 414 WP_040080996.1 hypothetical protein -
  M3709_RS08690 (M3709_08690) comE 1780921..1782234 (+) 1314 WP_040080997.1 type IV pilus secretin PilQ Machinery gene
  M3709_RS08695 (M3709_08695) nusB 1782315..1782728 (+) 414 WP_006247938.1 transcription antitermination factor NusB -
  M3709_RS08700 (M3709_08700) thiL 1782791..1783771 (+) 981 WP_006247939.1 thiamine-phosphate kinase -
  M3709_RS08705 (M3709_08705) - 1783776..1784249 (+) 474 WP_006247940.1 phosphatidylglycerophosphatase A -
  M3709_RS08710 (M3709_08710) - 1784256..1784879 (+) 624 WP_006247941.1 LysE family transporter -
  M3709_RS08715 (M3709_08715) ruvA 1784991..1785596 (+) 606 WP_006247943.1 Holliday junction branch migration protein RuvA -
  M3709_RS08720 (M3709_08720) ruvB 1785733..1786737 (+) 1005 WP_040080998.1 Holliday junction branch migration DNA helicase RuvB -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 48487.52 Da        Isoelectric Point: 8.0673

>NTDB_id=688653 M3709_RS08690 WP_040080997.1 1780921..1782234(+) (comE) [Mannheimia haemolytica strain 184]
MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNMVLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQ
EDDIVYIHKKEEKAADLTPLPIMNLQNNGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSN
SLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNDVTNNLNVN
FPITGGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLG
LEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIK
RLFSQTRDKISKRELVIFVTPYILQSNEKSSNRKKSK

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=688653 M3709_RS08690 WP_040080997.1 1780921..1782234(+) (comE) [Mannheimia haemolytica strain 184]
ATGTGGCGAATTTTTATATATTTCTTATGCGGTTTTTCATTAGCCTATGCGAATACCATTTCCATAGTTTTAAAAAATGC
TCCAACTTCGCTTATTTTTACTTATTTAGCGGAAGAAACCGGTAAAAATATGGTGCTTGATGATAATATTGAAACCAAAT
CAACACTACGATTAGAAAATAAATCGGTTGACGAGATTTTTAAAACGCTTGGCAAAGTCAATAAATTATCCTTAACGCAA
GAAGATGATATTGTTTATATTCACAAAAAAGAGGAAAAAGCGGCTGACTTAACGCCTCTGCCAATAATGAATTTGCAAAA
TAATGGGCAAAATACACCGCTTGTCACCGCCCCTAAGTTAATCACAAAAACCTTGAAACTACATTATGCAAAGGCTTCAG
AGGTGATTGAGTCGTTAACCAAAGGCAGCGGAACGTTTTTATCGGAAAACGGTTATATTCACTTTGATGAAAGAAGCAAT
AGCCTGATTGTGAAAGACAGTGCAAAATCGCTTAAAAATATCGAGAATTTAGTAAAACAGCTCGACCAACCCACCGAGCA
AATTGCGATTGAGGCTAGAATTGTCACTATCAGTAGCGAGCATTTGCAAGAGCTTGGCGTTCGCTGGGGAATTTTTTCTC
GTGGGGCTGGGCACTATAAATTTGGCGGACGGCTGGAAGGCAATGGACTCAACGATGTCACCAATAACTTAAATGTAAAT
TTTCCGATTACTGGTGGAGCATCTGCCGTATTACAGGTTGCGTCCATTAATAGCAGAGTGCTTGATTTAGAATTAAGTGC
ATTAGAACAAGAAAATAGTGTGGAAATTATTGCCAGCCCACGCCTGTTAACCACCAATAAAAAGCCGGCAAGTATCAAGC
AAGGCACGGAAATTCCTTATGTGATGTACAACACCAAATCGGAAGCCACCGATGTCGAATTTAAAGAAGCGGTATTAGGG
CTTGAAGTCGTTCCACACCTTTCAACCCAAAATCAAATTCTACTCGATCTGATCGTTACCCAAAATTCGCCAAATTCCCA
ATCCGGCAGTAGTGGCTTAATTACGATTGATAAACAAGAGCTAAATACGCAAGTATTTGCCAAACACGGCGAAACCATTG
TACTTGGTGGTATTTTTCAACATTTAACCCAAAAAGGCGAAGATAAAGTGCCGATTTTAGGCTCAATTCCCTTCATCAAG
CGGTTATTTAGTCAAACTCGAGATAAAATCAGCAAAAGAGAGCTAGTCATTTTTGTGACGCCTTATATCCTTCAATCTAA
TGAAAAGAGCAGCAACCGCAAAAAATCAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(267-424)

Bacterial type II/III secretion system short domain (Secretin_N)

(122-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

63.073

99.771

0.629
  comE Haemophilus influenzae Rd KW20

51.034

99.542

0.508
  comE Haemophilus influenzae 86-028NP

50.345

99.542

0.501
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

39.192

96.339

0.378
  pilQ Vibrio cholerae strain A1552

39.192

96.339

0.378
  pilQ Vibrio campbellii strain DS40M4

37.355

98.627

0.368