Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5D45_RS01765 Genome accession   NZ_CP097330
Coordinates   387027..387602 (+) Length   191 a.a.
NCBI ID   WP_144198867.1    Uniprot ID   A0AAE9HZG7
Organism   Cupriavidus campinensis strain G5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 382027..392602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5D45_RS01755 (M5D45_01755) uvrA 382407..385271 (-) 2865 WP_144198871.1 excinuclease ABC subunit UvrA -
  M5D45_RS01760 (M5D45_01760) - 385562..386818 (+) 1257 WP_144198869.1 MFS transporter -
  M5D45_RS01765 (M5D45_01765) ssb 387027..387602 (+) 576 WP_144198867.1 single-stranded DNA-binding protein Machinery gene
  M5D45_RS01770 (M5D45_01770) - 387691..388443 (-) 753 WP_144198865.1 hypothetical protein -
  M5D45_RS01775 (M5D45_01775) - 388729..389436 (+) 708 WP_149136761.1 hydrolase -
  M5D45_RS01780 (M5D45_01780) - 389758..390570 (-) 813 WP_144203073.1 IclR family transcriptional regulator -
  M5D45_RS01785 (M5D45_01785) - 390567..391376 (-) 810 WP_144203076.1 IclR family transcriptional regulator -
  M5D45_RS01790 (M5D45_01790) - 391505..392434 (+) 930 WP_144203079.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 19594.31 Da        Isoelectric Point: 5.9518

>NTDB_id=688617 M5D45_RS01765 WP_144198867.1 387027..387602(+) (ssb) [Cupriavidus campinensis strain G5]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGDFKEATEWHRIAFFGKLAEIAGQYLKKGSSVYIEG
RIRTRKWTDQAGQDKYSTEIVADQMQMLGGRASGGGEEGSFGGGGGGYSREAQGGAGGGGGGGYGGGRAQGGAQGGGAQG
GGQGGGQGGGQRRPQQSPSNGFEDMDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=688617 M5D45_RS01765 WP_144198867.1 387027..387602(+) (ssb) [Cupriavidus campinensis strain G5]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGTAACCTGGGCGCCGACCCGGAAACCCGCTACATGCCCAGCGGCGACGC
CGTGACGAACATCCGCCTGGCGACGACCGATCGCTACAAGGACAAGCAGTCCGGCGATTTCAAGGAAGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCAAGCTGGCCGAGATCGCCGGCCAGTACCTGAAGAAGGGCTCGTCGGTCTACATCGAAGGC
CGCATCCGCACGCGCAAGTGGACGGACCAGGCCGGCCAGGACAAGTACAGCACCGAAATCGTCGCGGACCAGATGCAGAT
GCTGGGCGGCCGCGCGTCGGGCGGCGGTGAGGAAGGCAGCTTCGGCGGCGGTGGCGGCGGCTACAGCCGCGAAGCCCAGG
GCGGCGCCGGCGGTGGCGGTGGTGGTGGCTACGGCGGCGGCCGTGCCCAGGGCGGCGCCCAGGGTGGCGGCGCGCAGGGA
GGCGGTCAGGGCGGCGGTCAGGGCGGCGGTCAGCGCCGGCCGCAGCAAAGCCCGTCGAACGGGTTTGAAGATATGGATGA
CGATATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.254

100

0.518
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.487
  ssb Neisseria meningitidis MC58

43.005

100

0.435
  ssb Neisseria gonorrhoeae MS11

42.487

100

0.429