Detailed information NTG0068846

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CFK21_RS12935
• Genome accession: NZ_AP018052
• Coordinates: 2809442..2810317 (+)
• Length: 291 a.a.
• NCBI ID: WP_096367048.1
• Uniprot ID: -
• Organism: Thiohalobacter thiocyanaticus strain FOKN1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2804442..2815317

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFK21_RS12920 (FOKN1_2647)	-	2805225..2806133 (-)	909	WP_096367045.1	glycosyltransferase family 2 protein	-
CFK21_RS12925 (FOKN1_2648)	pilB	2806395..2808116 (+)	1722	WP_096367046.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CFK21_RS12930 (FOKN1_2649)	pilC	2808211..2809431 (+)	1221	WP_096367047.1	type II secretion system F family protein	Machinery gene
CFK21_RS12935 (FOKN1_2650)	pilD	2809442..2810317 (+)	876	WP_096367048.1	A24 family peptidase	Machinery gene
CFK21_RS12940 (FOKN1_2651)	coaE	2810538..2811155 (+)	618	WP_096367049.1	dephospho-CoA kinase	-
CFK21_RS12945 (FOKN1_2652)	zapD	2811475..2812245 (+)	771	WP_096367050.1	cell division protein ZapD	-
CFK21_RS12950 (FOKN1_2653)	yacG	2812302..2812502 (+)	201	WP_096367051.1	DNA gyrase inhibitor YacG	-
CFK21_RS12955 (FOKN1_2654)	-	2812664..2813155 (-)	492	WP_096367052.1	hypothetical protein	-
CFK21_RS12960 (FOKN1_2655)	-	2813152..2814120 (-)	969	WP_096367053.1	Nudix family hydrolase	-
CFK21_RS12965 (FOKN1_2656)	argJ	2814089..2815303 (-)	1215	WP_096367054.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31870.03 Da
• Isoelectric Point: 6.6210

>NTDB_id=68846 CFK21_RS12935 WP_096367048.1 2809442..2810317(+) (pilD) [Thiohalobacter thiocyanaticus strain FOKN1]
MELLELIRTSPGWLIGVCALLGLVVGSFLNVVAHRLPLMMQREWESQCRELLAAPTADDTTPERFNLLTPASRCPHCGHR
IRAIENIPVLSWLFLRGRCGECRTPISVKYPLVEAFTGLTAGLLAWHFGFGWPLAAALVFTWMLIALSVIDIEHQLLPDS
LTLALLWLGLLLSLGEVFVGPEQAIIGAAAGYLALWTVYQLFRLLTGKEGMGFGDFKLLAACGAWMGWKLLPLIILLSSL
VGAVVGVAMILILGRDRQLPIPFGPYIAAAGWIALLWGEDLIQGYLRFAGL

Nucleotide

• Length: 876 bp

>NTDB_id=68846 CFK21_RS12935 WP_096367048.1 2809442..2810317(+) (pilD) [Thiohalobacter thiocyanaticus strain FOKN1]
ATGGAACTGCTGGAACTCATCCGGACCAGTCCGGGCTGGCTGATCGGCGTCTGTGCGCTGCTGGGCCTGGTGGTCGGCAG
CTTTCTCAACGTGGTCGCCCACCGCCTGCCGCTGATGATGCAGCGCGAGTGGGAGTCGCAGTGCCGGGAACTGCTCGCAG
CGCCGACTGCGGACGATACCACTCCGGAACGGTTCAACCTGCTCACCCCGGCCTCGCGCTGTCCCCACTGCGGCCACCGC
ATCCGCGCCATCGAAAACATCCCGGTCCTGAGTTGGCTGTTCCTGCGCGGCCGCTGCGGCGAGTGCCGGACACCCATCTC
CGTCAAATACCCGCTGGTCGAGGCCTTCACCGGCCTGACCGCGGGGCTGCTGGCCTGGCATTTCGGCTTCGGCTGGCCGC
TGGCCGCCGCCCTGGTCTTCACCTGGATGCTGATCGCCCTGAGCGTGATCGACATCGAGCACCAGCTGCTGCCCGACTCG
CTCACCCTGGCCCTGCTCTGGCTGGGCCTGCTGCTGAGTCTGGGCGAGGTCTTCGTCGGTCCGGAACAGGCCATCATCGG
CGCCGCTGCCGGCTATCTCGCACTGTGGACGGTGTACCAGCTGTTCCGGCTGCTCACCGGCAAGGAGGGCATGGGCTTCG
GCGACTTCAAACTGCTCGCCGCCTGCGGCGCCTGGATGGGCTGGAAGCTGCTGCCGCTGATCATCCTGCTCTCCTCGCTC
GTCGGCGCCGTGGTCGGTGTGGCGATGATCCTGATTCTCGGCCGCGACCGCCAGCTGCCCATCCCGTTCGGCCCCTACAT
CGCTGCCGCCGGCTGGATCGCGCTGCTGTGGGGCGAGGACCTCATCCAGGGTTATCTGCGCTTCGCCGGGTTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.448	98.282	0.515
pilD	Vibrio campbellii strain DS40M4	48.07	97.938	0.471
pilD	Acinetobacter baumannii D1279779	51.119	92.096	0.471
pilD	Acinetobacter nosocomialis M2	50.373	92.096	0.464
pilD	Neisseria gonorrhoeae MS11	49.02	87.629	0.43