Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | CFK21_RS12895 | Genome accession | NZ_AP018052 |
| Coordinates | 2798836..2800185 (+) | Length | 449 a.a. |
| NCBI ID | WP_096367040.1 | Uniprot ID | - |
| Organism | Thiohalobacter thiocyanaticus strain FOKN1 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2793836..2805185
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFK21_RS12875 (FOKN1_2638) | sucD | 2794178..2795047 (-) | 870 | WP_096367036.1 | succinate--CoA ligase subunit alpha | - |
| CFK21_RS12880 (FOKN1_2639) | sucC | 2795259..2796443 (-) | 1185 | WP_096367037.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| CFK21_RS12885 (FOKN1_2640) | - | 2796671..2796910 (+) | 240 | WP_096367038.1 | PP0621 family protein | - |
| CFK21_RS12890 (FOKN1_2641) | - | 2796907..2798529 (+) | 1623 | WP_096367039.1 | ATP-binding protein | - |
| CFK21_RS12895 (FOKN1_2642) | pilR | 2798836..2800185 (+) | 1350 | WP_096367040.1 | sigma-54 dependent transcriptional regulator | Regulator |
| CFK21_RS15610 (FOKN1_2643) | - | 2800550..2800957 (+) | 408 | WP_096367041.1 | pilin | - |
| CFK21_RS12905 (FOKN1_2645) | - | 2801020..2803056 (+) | 2037 | WP_096367042.1 | lipopolysaccharide assembly protein LapB | - |
| CFK21_RS12910 | - | 2803221..2804102 (-) | 882 | WP_096367043.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
| CFK21_RS12915 | - | 2804153..2805073 (-) | 921 | WP_096367044.1 | sulfotransferase | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 49328.29 Da Isoelectric Point: 5.3757
>NTDB_id=68843 CFK21_RS12895 WP_096367040.1 2798836..2800185(+) (pilR) [Thiohalobacter thiocyanaticus strain FOKN1]
MARYRALVVDDEPDILELIEITLGRMDIDTTTAADLAVARKQLGNGARFDLCLTDMRLPDGSGLDLVAEIQASRPDLPVA
VITAYGSMDTAVQALKAGAFDFVSKPVDLQVLRNLVGTALKLSDTRSFPARDRRSRDELIGDSAPMQRIRALIAKLARSQ
APVYISGESGTGKELVAHLIHDKGPRAEQPFIAVNCGAIPAELMESEFFGHKKGSFTGATGDKEGLFQAASGGTLFLDEV
AELPLHMQVKLLRAIQEKAVRPVGEQRETPVDVRVLTATHKNLEQLVRDGHFRQDLYFRINVIELKVPPLRERREDIPRL
VEHLLSKLGHDARHRLSDTAVQALQAYDFPGNVRELENILERAVTMAEGEIIEAEDLHLQTNTASDQPTTAGSPPPPGSV
PLEDYLGEIEKQAILDALDQTHQNKTAAAELLGLSFRALRYRLKKLGLD
MARYRALVVDDEPDILELIEITLGRMDIDTTTAADLAVARKQLGNGARFDLCLTDMRLPDGSGLDLVAEIQASRPDLPVA
VITAYGSMDTAVQALKAGAFDFVSKPVDLQVLRNLVGTALKLSDTRSFPARDRRSRDELIGDSAPMQRIRALIAKLARSQ
APVYISGESGTGKELVAHLIHDKGPRAEQPFIAVNCGAIPAELMESEFFGHKKGSFTGATGDKEGLFQAASGGTLFLDEV
AELPLHMQVKLLRAIQEKAVRPVGEQRETPVDVRVLTATHKNLEQLVRDGHFRQDLYFRINVIELKVPPLRERREDIPRL
VEHLLSKLGHDARHRLSDTAVQALQAYDFPGNVRELENILERAVTMAEGEIIEAEDLHLQTNTASDQPTTAGSPPPPGSV
PLEDYLGEIEKQAILDALDQTHQNKTAAAELLGLSFRALRYRLKKLGLD
Nucleotide
Download Length: 1350 bp
>NTDB_id=68843 CFK21_RS12895 WP_096367040.1 2798836..2800185(+) (pilR) [Thiohalobacter thiocyanaticus strain FOKN1]
ATGGCCCGCTACCGCGCACTCGTTGTCGATGACGAACCCGACATCCTCGAGCTGATCGAGATCACGCTCGGGCGCATGGA
CATCGACACCACCACCGCCGCCGACCTGGCCGTGGCGCGCAAACAACTCGGCAACGGCGCCCGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCCGGCCTGGACCTGGTCGCCGAGATCCAGGCCAGCCGGCCCGACCTGCCGGTGGCC
GTGATCACCGCCTACGGCAGCATGGACACCGCCGTGCAGGCGCTCAAGGCCGGCGCCTTCGACTTCGTCTCCAAGCCGGT
GGACCTGCAGGTGCTGCGCAACCTGGTGGGCACCGCACTGAAACTCTCCGATACCCGCAGCTTCCCCGCGCGCGACCGTC
GCTCCCGCGACGAACTGATCGGCGACTCTGCCCCCATGCAGCGCATCCGCGCCCTGATCGCCAAGCTGGCCCGCAGTCAG
GCCCCGGTCTACATCAGCGGCGAGTCCGGCACCGGCAAGGAACTGGTCGCCCACCTGATCCACGACAAGGGGCCACGCGC
CGAGCAGCCTTTCATCGCGGTCAACTGCGGCGCCATCCCGGCCGAGTTGATGGAAAGCGAGTTCTTCGGCCACAAAAAAG
GCAGCTTCACCGGCGCGACCGGCGACAAGGAAGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTGGACGAGGTC
GCCGAACTGCCGCTGCACATGCAGGTCAAGCTGCTACGCGCCATTCAGGAGAAGGCCGTGCGCCCGGTGGGCGAGCAGCG
CGAGACGCCGGTGGACGTGCGCGTACTCACCGCCACCCACAAGAACCTGGAGCAGCTGGTGCGCGACGGTCACTTCCGCC
AGGACCTGTACTTCCGCATCAACGTGATCGAACTGAAGGTGCCGCCCCTGCGCGAGCGGCGCGAAGACATCCCCCGGCTG
GTCGAGCACCTGCTGAGCAAACTCGGCCACGACGCCCGGCACCGGCTGAGCGACACCGCGGTGCAGGCCCTGCAGGCCTA
CGATTTTCCCGGCAACGTACGTGAACTGGAAAACATCCTGGAGCGCGCCGTCACCATGGCCGAAGGTGAAATCATCGAAG
CCGAAGACCTGCACCTGCAGACGAACACGGCAAGCGACCAACCGACCACGGCCGGCAGTCCTCCGCCGCCCGGCAGCGTC
CCGCTGGAGGACTACCTGGGCGAGATCGAGAAACAGGCCATCCTCGACGCCCTCGACCAGACCCATCAGAACAAGACCGC
CGCCGCCGAACTGCTGGGCCTGAGCTTCCGCGCCCTGCGCTATCGCCTGAAGAAGCTGGGCTTGGACTGA
ATGGCCCGCTACCGCGCACTCGTTGTCGATGACGAACCCGACATCCTCGAGCTGATCGAGATCACGCTCGGGCGCATGGA
CATCGACACCACCACCGCCGCCGACCTGGCCGTGGCGCGCAAACAACTCGGCAACGGCGCCCGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCTCCGGCCTGGACCTGGTCGCCGAGATCCAGGCCAGCCGGCCCGACCTGCCGGTGGCC
GTGATCACCGCCTACGGCAGCATGGACACCGCCGTGCAGGCGCTCAAGGCCGGCGCCTTCGACTTCGTCTCCAAGCCGGT
GGACCTGCAGGTGCTGCGCAACCTGGTGGGCACCGCACTGAAACTCTCCGATACCCGCAGCTTCCCCGCGCGCGACCGTC
GCTCCCGCGACGAACTGATCGGCGACTCTGCCCCCATGCAGCGCATCCGCGCCCTGATCGCCAAGCTGGCCCGCAGTCAG
GCCCCGGTCTACATCAGCGGCGAGTCCGGCACCGGCAAGGAACTGGTCGCCCACCTGATCCACGACAAGGGGCCACGCGC
CGAGCAGCCTTTCATCGCGGTCAACTGCGGCGCCATCCCGGCCGAGTTGATGGAAAGCGAGTTCTTCGGCCACAAAAAAG
GCAGCTTCACCGGCGCGACCGGCGACAAGGAAGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTGGACGAGGTC
GCCGAACTGCCGCTGCACATGCAGGTCAAGCTGCTACGCGCCATTCAGGAGAAGGCCGTGCGCCCGGTGGGCGAGCAGCG
CGAGACGCCGGTGGACGTGCGCGTACTCACCGCCACCCACAAGAACCTGGAGCAGCTGGTGCGCGACGGTCACTTCCGCC
AGGACCTGTACTTCCGCATCAACGTGATCGAACTGAAGGTGCCGCCCCTGCGCGAGCGGCGCGAAGACATCCCCCGGCTG
GTCGAGCACCTGCTGAGCAAACTCGGCCACGACGCCCGGCACCGGCTGAGCGACACCGCGGTGCAGGCCCTGCAGGCCTA
CGATTTTCCCGGCAACGTACGTGAACTGGAAAACATCCTGGAGCGCGCCGTCACCATGGCCGAAGGTGAAATCATCGAAG
CCGAAGACCTGCACCTGCAGACGAACACGGCAAGCGACCAACCGACCACGGCCGGCAGTCCTCCGCCGCCCGGCAGCGTC
CCGCTGGAGGACTACCTGGGCGAGATCGAGAAACAGGCCATCCTCGACGCCCTCGACCAGACCCATCAGAACAAGACCGC
CGCCGCCGAACTGCTGGGCCTGAGCTTCCGCGCCCTGCGCTATCGCCTGAAGAAGCTGGGCTTGGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
63.274 |
100 |
0.637 |
| pilR | Acinetobacter baumannii strain A118 |
52.723 |
100 |
0.539 |
| luxO | Vibrio cholerae strain A1552 |
37.892 |
99.332 |
0.376 |