Detailed information NTG0688328

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M4S28_RS14715
• Genome accession: NZ_CP097293
• Coordinates: 3306648..3307517 (+)
• Length: 289 a.a.
• NCBI ID: WP_249632026.1
• Uniprot ID: -
• Organism: Vibrio sp. J383
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3301648..3312517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M4S28_RS14695 (M4S28_14695)	nadC	3302076..3302966 (+)	891	WP_017079961.1	carboxylating nicotinate-nucleotide diphosphorylase	-
M4S28_RS14700 (M4S28_14700)	-	3303222..3303650 (+)	429	WP_249632023.1	pilin	-
M4S28_RS14705 (M4S28_14705)	pilB	3303651..3305336 (+)	1686	WP_249632024.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M4S28_RS14710 (M4S28_14710)	pilC	3305351..3306580 (+)	1230	WP_249632025.1	type II secretion system F family protein	Machinery gene
M4S28_RS14715 (M4S28_14715)	pilD	3306648..3307517 (+)	870	WP_249632026.1	A24 family peptidase	Machinery gene
M4S28_RS14720 (M4S28_14720)	coaE	3307520..3308134 (+)	615	WP_017079956.1	dephospho-CoA kinase	-
M4S28_RS14725 (M4S28_14725)	zapD	3308161..3308901 (+)	741	WP_017088714.1	cell division protein ZapD	-
M4S28_RS14730 (M4S28_14730)	yacG	3308983..3309180 (+)	198	WP_017056605.1	DNA gyrase inhibitor YacG	-
M4S28_RS14735 (M4S28_14735)	rplS	3309542..3309895 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
M4S28_RS14740 (M4S28_14740)	trmD	3309955..3310695 (-)	741	WP_004735512.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
M4S28_RS14745 (M4S28_14745)	rimM	3310722..3311276 (-)	555	WP_004735510.1	ribosome maturation factor RimM	-
M4S28_RS14750 (M4S28_14750)	rpsP	3311301..3311549 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32572.74 Da
• Isoelectric Point: 6.9289

>NTDB_id=688328 M4S28_RS14715 WP_249632026.1 3306648..3307517(+) (pilD) [Vibrio sp. J383]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGEFNLSIPRSTCPKCKTQLRII
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=688328 M4S28_RS14715 WP_249632026.1 3306648..3307517(+) (pilD) [Vibrio sp. J383]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATCCACCGTTTACCGATAATGATGGAACGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCGCCAGAGGGAGAGTTCAATCTCAGTATCCCTCGTTCTACCTGCCCGAAATGTAAAACCCAATTAAGAATCATC
GACAATATTCCAGTATTAAGTTGGTTGTTCTTAAAGGGCAAGTGTCATAGCTGTGCTAACCCAATCAGCGCTCGTTACCC
ATTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCGAGCCACTTTGGTTTCAGTTACTACGCCATTGCTTTGA
TTTTTTTCACGTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACTATGCTGTTGCCTGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCGTTAGCTCTGTTTAATATCAGCCCTGTATCGCTTCAAGATTCCGTGGTTGGTGCAATGGC
AGGTTATCTAGCGCTATGGTCTGTTTACTGGTTATTCAAACTACTGACAGGCAAAGAAGGCATGGGTTACGGCGACTTCA
AACTTCTGGCTGCGCTTGGCGCCTGGCTTGGCTGGCAGCACCTACCAATGATCATTCTTTTGTCGTCGCTGGTCGGTTTA
GTTTTCGGCTTGATTCAACTTCGCTTGAAACAGCAAGGCATAGATAAAGCCTTTCCCTTTGGACCTTACCTTGCAATTGC
GGGTTGGGTGAGTTTGATGTGGGGCAACGACATCATGGGCTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	68.75	99.654	0.685
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Acinetobacter nosocomialis M2	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436