Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M5C98_RS24095 Genome accession   NZ_CP097267
Coordinates   5293856..5294428 (+) Length   190 a.a.
NCBI ID   WP_272550076.1    Uniprot ID   -
Organism   Acidovorax sp. NCPPB 3576     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5288856..5299428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C98_RS24080 (M5C98_24080) - 5290642..5291757 (-) 1116 WP_272550073.1 3-deoxy-7-phosphoheptulonate synthase -
  M5C98_RS24085 (M5C98_24085) - 5291803..5292285 (-) 483 WP_272550074.1 C40 family peptidase -
  M5C98_RS24090 (M5C98_24090) - 5292332..5293678 (-) 1347 WP_272550075.1 chloride channel protein -
  M5C98_RS24095 (M5C98_24095) ssb 5293856..5294428 (+) 573 WP_272550076.1 single-stranded DNA-binding protein Machinery gene
  M5C98_RS24100 (M5C98_24100) - 5294533..5295588 (-) 1056 WP_272550077.1 amidohydrolase family protein -
  M5C98_RS24105 (M5C98_24105) - 5295599..5296294 (-) 696 WP_272550079.1 type 1 glutamine amidotransferase domain-containing protein -
  M5C98_RS24110 (M5C98_24110) - 5296409..5296708 (-) 300 WP_272550080.1 superoxide dismutase -
  M5C98_RS24115 (M5C98_24115) - 5296879..5297862 (+) 984 WP_272550081.1 LysR family transcriptional regulator -
  M5C98_RS24120 (M5C98_24120) - 5297864..5298601 (-) 738 WP_272550083.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20048.09 Da        Isoelectric Point: 5.9555

>NTDB_id=688231 M5C98_RS24095 WP_272550076.1 5293856..5294428(+) (ssb) [Acidovorax sp. NCPPB 3576]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQAGQEKFTTEIRADSMQMLGSRQGMGGGGQGGGGGYEDSGYGGGGNDGGYDNSAAPAPARRPAPAPAPRPA
APAPRPAPAPAAQAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=688231 M5C98_RS24095 WP_272550076.1 5293856..5294428(+) (ssb) [Acidovorax sp. NCPPB 3576]
ATGGCATCCGTCAACAAAGTCATCATCGTGGGCAACCTCGGGCGCGATCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAAAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTGTTCAACGGCCGCCTGGCCGAAATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTGGAAGGC
AGCTTGCGCACCCGCAAGTGGACCGACCAGGCCGGCCAGGAAAAATTCACCACCGAAATCCGAGCCGACAGCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGTGGCGGCCAGGGCGGTGGTGGTGGCTACGAAGACAGCGGCTACGGTGGCGGTG
GCAACGACGGCGGCTACGACAACAGCGCCGCCCCCGCGCCGGCACGCCGCCCTGCCCCGGCACCTGCGCCGCGGCCTGCA
GCGCCGGCGCCCCGTCCGGCACCGGCACCCGCGGCCCAGGCCCCGCGTGCGGCCTCGGGCTTCGACGACATGGACGACGA
CATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.579

100

0.516
  ssb Vibrio cholerae strain A1552

47.449

100

0.489
  ssb Neisseria gonorrhoeae MS11

44.737

100

0.447
  ssb Neisseria meningitidis MC58

44.211

100

0.442