Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ALGA_RS05665 | Genome accession | NZ_AP018042 |
| Coordinates | 1512703..1513128 (+) | Length | 141 a.a. |
| NCBI ID | WP_096428404.1 | Uniprot ID | A0A1Y1CGP6 |
| Organism | Labilibaculum antarcticum strain SPP2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1507703..1518128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALGA_RS05650 (ALGA_1115) | - | 1509341..1510897 (-) | 1557 | WP_096428401.1 | Rne/Rng family ribonuclease | - |
| ALGA_RS05655 (ALGA_1116) | - | 1511146..1511430 (-) | 285 | WP_096428402.1 | HU family DNA-binding protein | - |
| ALGA_RS05660 (ALGA_1117) | mutY | 1511581..1512639 (+) | 1059 | WP_096428403.1 | A/G-specific adenine glycosylase | - |
| ALGA_RS05665 (ALGA_1118) | ssb | 1512703..1513128 (+) | 426 | WP_096428404.1 | single-stranded DNA-binding protein | Machinery gene |
| ALGA_RS05670 (ALGA_1119) | gldE | 1513253..1514491 (+) | 1239 | WP_096433450.1 | gliding motility-associated protein GldE | - |
| ALGA_RS05675 (ALGA_1120) | gldD | 1514551..1515132 (+) | 582 | WP_096428405.1 | gliding motility lipoprotein GldD | - |
| ALGA_RS05680 (ALGA_1121) | - | 1515149..1515799 (+) | 651 | WP_096428406.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| ALGA_RS05685 (ALGA_1122) | - | 1515843..1517468 (-) | 1626 | WP_162845389.1 | alkaline phosphatase family protein | - |
| ALGA_RS05690 (ALGA_1123) | - | 1517594..1517944 (-) | 351 | WP_096428408.1 | DUF190 domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15776.71 Da Isoelectric Point: 4.9936
>NTDB_id=68785 ALGA_RS05665 WP_096428404.1 1512703..1513128(+) (ssb) [Labilibaculum antarcticum strain SPP2]
MSVNKVILVGNVGKDPEVKYLDNGVAVCNFSLATSETYNNKNGEKVTQTEWHNIVLWRKLAEIAESYVKKGMQIYVEGQI
RTRNWEDKDGIKRYTTEIFGTTMQMLGRKAENVSESKTSNAAPQPAASESPVADETDDLPF
MSVNKVILVGNVGKDPEVKYLDNGVAVCNFSLATSETYNNKNGEKVTQTEWHNIVLWRKLAEIAESYVKKGMQIYVEGQI
RTRNWEDKDGIKRYTTEIFGTTMQMLGRKAENVSESKTSNAAPQPAASESPVADETDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=68785 ALGA_RS05665 WP_096428404.1 1512703..1513128(+) (ssb) [Labilibaculum antarcticum strain SPP2]
ATGTCAGTAAACAAAGTAATTCTTGTTGGAAATGTTGGGAAAGACCCAGAAGTAAAATACCTTGACAATGGTGTTGCTGT
TTGTAACTTTTCTCTTGCTACAAGCGAAACCTACAACAATAAAAACGGTGAAAAAGTTACACAAACAGAATGGCACAACA
TTGTATTGTGGCGTAAACTCGCAGAAATTGCAGAAAGTTACGTTAAAAAAGGAATGCAAATCTATGTTGAAGGACAAATT
AGAACACGTAATTGGGAAGACAAAGATGGTATAAAAAGATATACGACGGAGATTTTTGGTACTACCATGCAAATGTTAGG
TCGTAAAGCTGAAAATGTATCTGAATCAAAAACAAGTAATGCAGCGCCACAGCCAGCAGCTTCGGAATCACCGGTGGCAG
ATGAAACGGATGACCTTCCTTTCTAG
ATGTCAGTAAACAAAGTAATTCTTGTTGGAAATGTTGGGAAAGACCCAGAAGTAAAATACCTTGACAATGGTGTTGCTGT
TTGTAACTTTTCTCTTGCTACAAGCGAAACCTACAACAATAAAAACGGTGAAAAAGTTACACAAACAGAATGGCACAACA
TTGTATTGTGGCGTAAACTCGCAGAAATTGCAGAAAGTTACGTTAAAAAAGGAATGCAAATCTATGTTGAAGGACAAATT
AGAACACGTAATTGGGAAGACAAAGATGGTATAAAAAGATATACGACGGAGATTTTTGGTACTACCATGCAAATGTTAGG
TCGTAAAGCTGAAAATGTATCTGAATCAAAAACAAGTAATGCAGCGCCACAGCCAGCAGCTTCGGAATCACCGGTGGCAG
ATGAAACGGATGACCTTCCTTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria meningitidis MC58 |
44.828 |
100 |
0.553 |
| ssb | Neisseria gonorrhoeae MS11 |
44.828 |
100 |
0.553 |
| ssb | Vibrio cholerae strain A1552 |
41.618 |
100 |
0.511 |
| ssb | Glaesserella parasuis strain SC1401 |
38.764 |
100 |
0.489 |