Detailed information NTG0687837

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MLL77_RS17895
• Genome accession: NZ_CP097209
• Coordinates: 3895279..3896154 (+)
• Length: 291 a.a.
• NCBI ID: WP_182976107.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain W3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3890279..3901154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MLL77_RS17875 (MLL77_17840)	nadC	3890508..3891371 (+)	864	WP_041213995.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MLL77_RS17880 (MLL77_17845)	-	3891682..3892122 (+)	441	WP_274799056.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MLL77_RS17885 (MLL77_17850)	pilB	3892126..3893832 (+)	1707	WP_274799055.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MLL77_RS17890 (MLL77_17855)	pilC	3893960..3895201 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
MLL77_RS17895 (MLL77_17860)	pilD	3895279..3896154 (+)	876	WP_182976107.1	A24 family peptidase	Machinery gene
MLL77_RS17900 (MLL77_17865)	coaE	3896173..3896787 (+)	615	WP_048208563.1	dephospho-CoA kinase	-
MLL77_RS17905 (MLL77_17870)	zapD	3896825..3897547 (+)	723	WP_010675825.1	cell division protein ZapD	-
MLL77_RS17910 (MLL77_17875)	yacG	3897558..3897752 (+)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
MLL77_RS17915 (MLL77_17880)	mutT	3897810..3898214 (-)	405	WP_174213873.1	8-oxo-dGTP diphosphatase MutT	-
MLL77_RS17920 (MLL77_17885)	-	3898223..3899407 (-)	1185	WP_282414465.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31906.98 Da
• Isoelectric Point: 6.4831

>NTDB_id=687837 MLL77_RS17895 WP_182976107.1 3895279..3896154(+) (pilD) [Aeromonas caviae strain W3]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMEQAWHAEYSDYFGDGEETPPATGRYNLMVPRSHCPHCDH
PIGALENIPLLSWLCLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=687837 MLL77_RS17895 WP_182976107.1 3895279..3896154(+) (pilD) [Aeromonas caviae strain W3]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGTCTGCCCATCATGATGGAGCAGGCCTGGCATGCCGAATACAGCGACTATTTCG
GCGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCTCGCTCCCACTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGCCTCAGAGGGCGCTGCCGCAACTGCCACGCTCCCAT
TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCACTGCTGTCGGTCTCGGTGGCAGCCGCGCTTGCCCCTGGCTGGG
GCACCCTTGCTGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT
CGGCGCCATGGCTGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACCGGCAAAGAGGGGATGGGGT
ACGGGGATTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (140-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.069	98.969	0.594
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	52.33	95.876	0.502
pilD	Acinetobacter nosocomialis M2	52.33	95.876	0.502
pilD	Neisseria gonorrhoeae MS11	50.958	89.691	0.457