Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M4R69_RS15870 Genome accession   NZ_CP097198
Coordinates   3266876..3267412 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain 2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3261876..3272412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4R69_RS15850 (M4R69_15845) soxR 3263604..3264068 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  M4R69_RS15855 (M4R69_15850) soxS 3264154..3264477 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  M4R69_RS15860 (M4R69_15855) pdeC 3264480..3266066 (-) 1587 WP_000019544.1 c-di-GMP phosphodiesterase PdeC -
  M4R69_RS15865 (M4R69_15860) yjcB 3266496..3266777 (+) 282 WP_001295689.1 YjcB family protein -
  M4R69_RS15870 (M4R69_15865) ssb 3266876..3267412 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  M4R69_RS15875 (M4R69_15870) uvrA 3267666..3270488 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  M4R69_RS15880 (M4R69_15875) yjbR 3270523..3270879 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  M4R69_RS15885 (M4R69_15880) yjbQ 3270883..3271299 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  M4R69_RS15890 (M4R69_15885) aphA 3271410..3272123 (-) 714 WP_001389200.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=687714 M4R69_RS15870 WP_000168305.1 3266876..3267412(-) (ssb) [Escherichia coli strain 2-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=687714 M4R69_RS15870 WP_000168305.1 3266876..3267412(-) (ssb) [Escherichia coli strain 2-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489