Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M2M89_RS20740 Genome accession   NZ_CP097130
Coordinates   4041389..4041907 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain S16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4036389..4046907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS20710 yyaJ 4036893..4038248 (+) 1356 WP_041850266.1 MFS transporter -
  M2M89_RS20715 maa 4038282..4038836 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  M2M89_RS20720 yyaH 4038852..4039232 (-) 381 WP_015715075.1 VOC family protein -
  M2M89_RS20725 ccpB 4039288..4040223 (-) 936 WP_015715076.1 transcriptional regulator CcpB -
  M2M89_RS20730 xth 4040283..4041041 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  M2M89_RS20735 rpsR 4041106..4041345 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  M2M89_RS20740 ssbA 4041389..4041907 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  M2M89_RS20745 rpsF 4041948..4042235 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  M2M89_RS20750 ychF 4042346..4043446 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  M2M89_RS20755 yyaE 4043573..4045576 (-) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  M2M89_RS20760 yyzM 4045627..4045833 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=687469 M2M89_RS20740 WP_003219228.1 4041389..4041907(-) (ssbA) [Bacillus subtilis strain S16]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=687469 M2M89_RS20740 WP_003219228.1 4041389..4041907(-) (ssbA) [Bacillus subtilis strain S16]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378