Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M3L73_RS00680 Genome accession   NZ_CP097102
Coordinates   151135..151794 (+) Length   219 a.a.
NCBI ID   WP_249017311.1    Uniprot ID   -
Organism   Vreelandella venusta strain SND-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 146135..156794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3L73_RS00670 (M3L73_00670) uvrA 146565..149414 (-) 2850 WP_249017310.1 excinuclease ABC subunit UvrA -
  M3L73_RS00675 (M3L73_00675) - 149586..150965 (+) 1380 WP_249018201.1 MFS transporter -
  M3L73_RS00680 (M3L73_00680) ssb 151135..151794 (+) 660 WP_249017311.1 single-stranded DNA-binding protein Machinery gene
  M3L73_RS00685 (M3L73_00685) - 151853..152743 (+) 891 WP_125744877.1 sugar nucleotide-binding protein -
  M3L73_RS00690 (M3L73_00690) - 152740..153474 (+) 735 WP_193061448.1 lysophospholipid acyltransferase family protein -
  M3L73_RS00695 (M3L73_00695) fabB 153563..154780 (-) 1218 WP_249017312.1 beta-ketoacyl-ACP synthase I -
  M3L73_RS00700 (M3L73_00700) fabA 154793..155308 (-) 516 WP_038480285.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23670.74 Da        Isoelectric Point: 6.4917

>NTDB_id=687034 M3L73_RS00680 WP_249017311.1 151135..151794(+) (ssb) [Vreelandella venusta strain SND-01]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATSDTWMDRQSGQRQERTEWHRIVLFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDSRGGDFQGGGAPQGGYAQNNPAQGAPAQQQHAPQHPAPQHSASQGHQSGG
MPQQGGYPPQGGAPQGNYGGAPQPARGPQHSQPAPANQNSNYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 660 bp        

>NTDB_id=687034 M3L73_RS00680 WP_249017311.1 151135..151794(+) (ssb) [Vreelandella venusta strain SND-01]
ATGGCGCGCGGTATTAACAAAGTCATTTTGATTGGTAATCTGGGCCAAGACCCTGAAGTACGCTTTACGCCCTCCGGAAC
GGCGGTAGCAAACCTGAATTTGGCGACGTCTGACACCTGGATGGACCGCCAAAGTGGACAACGCCAAGAGCGTACCGAGT
GGCACCGCATTGTGTTGTTCAATAAGACCGCTGAGATTGCCCAGCAGTACCTGAAAAAGGGCTCTAAGGTCTACATTGAA
GGTCGTCTACAAACCCGTAAGTGGCAAGACCAAAACGGTCAAGATCGCTACAGCACGGAAATTGTGGCCAACGACATGCA
GATGCTAGATAGTCGTGGCGGCGATTTCCAGGGTGGCGGAGCACCTCAAGGTGGTTACGCACAAAATAACCCTGCACAAG
GCGCACCAGCCCAGCAGCAACACGCGCCGCAGCACCCCGCTCCTCAGCATTCGGCCTCTCAGGGGCATCAGAGTGGCGGT
ATGCCTCAGCAGGGTGGTTACCCTCCCCAGGGCGGTGCTCCTCAAGGTAACTATGGCGGCGCGCCCCAGCCTGCTCGTGG
GCCACAACACAGCCAGCCAGCTCCCGCCAATCAAAACAGCAATTATGGGGCTCCGGATCCAGGCAACTTCGATGATTTTG
ACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.673

100

0.516
  ssb Glaesserella parasuis strain SC1401

46.396

100

0.47
  ssb Neisseria meningitidis MC58

44.907

98.63

0.443
  ssb Neisseria gonorrhoeae MS11

44.907

98.63

0.443