Detailed information NTG0068696

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: IGS56_RS06025
• Genome accession: NZ_AP022846
• Coordinates: 1224584..1225924 (+)
• Length: 446 a.a.
• NCBI ID: WP_103707998.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain TAMBA230
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1219584..1230924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IGS56_RS06010 (JPHIA_11310)	lrp	1220639..1221118 (+)	480	WP_005664572.1	leucine-responsive transcriptional regulator Lrp	-
IGS56_RS06015 (JPHIA_11320)	-	1221120..1223888 (+)	2769	WP_071162579.1	DNA translocase FtsK	-
IGS56_RS06020 (JPHIA_11330)	lolA	1223906..1224523 (+)	618	WP_071162578.1	outer membrane lipoprotein chaperone LolA	-
IGS56_RS06025 (JPHIA_11340)	rarA	1224584..1225924 (+)	1341	WP_103707998.1	replication-associated recombination protein A	Machinery gene
IGS56_RS06030 (JPHIA_11350)	aroA	1226007..1227305 (-)	1299	WP_114877393.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
IGS56_RS06035 (JPHIA_11360)	purU	1227305..1228141 (-)	837	WP_005661478.1	formyltetrahydrofolate deformylase	-
IGS56_RS06040 (JPHIA_11370)	-	1228211..1228615 (-)	405	WP_005647241.1	H-NS family nucleoid-associated regulatory protein	-
IGS56_RS06045 (JPHIA_11380)	-	1229058..1230578 (+)	1521	WP_071162575.1	Na+/H+ antiporter NhaC family protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50346.13 Da
• Isoelectric Point: 6.3316

>NTDB_id=68696 IGS56_RS06025 WP_103707998.1 1224584..1225924(+) (rarA) [Haemophilus influenzae strain TAMBA230]
MSNLNFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIERAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAIEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTFLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
SRVGAYEGERAIAQAIIYLSVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=68696 IGS56_RS06025 WP_103707998.1 1224584..1225924(+) (rarA) [Haemophilus influenzae strain TAMBA230]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACAAATCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGTCATATTCATTCTATGA
TTTTCTGGGGCCCACCAGGTACAGGAAAAACAACGCTCGCAGAAATCATAGCACAACGTATTAATGCGGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGAGCGAGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCAGAGTATAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTATAGAAGATCCTGAACGTGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTACTTGCCGAATATGTCAATGGAGATGCGCGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGATGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTCTTAAAAGAAGTCTTA
GGTGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGAGACCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCGGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
AGTCGCGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATATATCTTTCGGTAGCACCAAAAAGTAATGC
CGTTTATACGGCGTTTAACACAGCAAAACAGCAAGCGAAAGATTTACCTGATTACGATGTTCCACCACATTTACGCAATG
CGCCAACTAATTTAATGAAAGAGCTCGGCTATGGCACTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGACACTCAATATTATTTTCCAACGAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-266)

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.007	94.843	0.37