Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M2901_RS04455 Genome accession   NZ_CP097072
Coordinates   907552..908055 (-) Length   167 a.a.
NCBI ID   WP_248848444.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 902552..913055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2901_RS04435 (M2901_04435) - 903610..905229 (+) 1620 WP_023606932.1 ATP-binding cassette domain-containing protein -
  M2901_RS04440 (M2901_04440) dnaB 905302..906663 (-) 1362 WP_023606931.1 replicative DNA helicase -
  M2901_RS04445 (M2901_04445) rplI 906693..907145 (-) 453 WP_023606930.1 50S ribosomal protein L9 -
  M2901_RS04450 (M2901_04450) rpsR 907291..907530 (-) 240 WP_023606929.1 30S ribosomal protein S18 -
  M2901_RS04455 (M2901_04455) ssbA 907552..908055 (-) 504 WP_248848444.1 single-stranded DNA-binding protein Machinery gene
  M2901_RS04460 (M2901_04460) rpsF 908098..908397 (-) 300 WP_126762178.1 30S ribosomal protein S6 -
  M2901_RS04465 (M2901_04465) gyrA 908568..911036 (-) 2469 WP_248856212.1 DNA gyrase subunit A -
  M2901_RS04470 (M2901_04470) gyrB 911060..913015 (-) 1956 WP_222316953.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18516.42 Da        Isoelectric Point: 4.9114

>NTDB_id=686927 M2901_RS04455 WP_248848444.1 907552..908055(-) (ssbA) [Vagococcus lutrae strain AT03]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQGSGTDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=686927 M2901_RS04455 WP_248848444.1 907552..908055(-) (ssbA) [Vagococcus lutrae strain AT03]
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAACGGTGTCGCTGTTGC
AACATTCACATTAGCAATTGATCGTCCATTTACAAATCAAAGCGGTAATCGCGAAGCTGATTTTATCAACACGGTGATTT
GGCGAAAACCAGCAGAAACGCTGGCTAATTACGCACGAAAAGGGACTCTGATTGGTGTGGTAGGACGTATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCAGACAGTTTCCAATTCTTAGAGTCGAAGTC
AGTTAATGAACAACGACGTCAGGGATCTGGTACAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAATCAT
CATCTTCAATGCCACAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATTGATATC
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

59.649

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.371