Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M2904_RS07380 Genome accession   NZ_CP097053
Coordinates   1488332..1488835 (-) Length   167 a.a.
NCBI ID   WP_023606928.1    Uniprot ID   V6Q3E5
Organism   Vagococcus lutrae strain AT15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1483332..1493835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2904_RS07360 (M2904_07360) - 1484668..1485963 (+) 1296 WP_222316914.1 ISL3 family transposase -
  M2904_RS07365 (M2904_07365) dnaB 1486082..1487443 (-) 1362 WP_023606931.1 replicative DNA helicase -
  M2904_RS07370 (M2904_07370) rplI 1487473..1487925 (-) 453 WP_023606930.1 50S ribosomal protein L9 -
  M2904_RS07375 (M2904_07375) rpsR 1488071..1488310 (-) 240 WP_023606929.1 30S ribosomal protein S18 -
  M2904_RS07380 (M2904_07380) ssbA 1488332..1488835 (-) 504 WP_023606928.1 single-stranded DNA-binding protein Machinery gene
  M2904_RS07385 (M2904_07385) rpsF 1488878..1489177 (-) 300 WP_126762178.1 30S ribosomal protein S6 -
  M2904_RS07390 (M2904_07390) - 1489488..1490783 (+) 1296 WP_222316914.1 ISL3 family transposase -
  M2904_RS07395 (M2904_07395) gyrA 1490869..1493346 (-) 2478 WP_248853019.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18588.48 Da        Isoelectric Point: 4.7420

>NTDB_id=686720 M2904_RS07380 WP_023606928.1 1488332..1488835(-) (ssbA) [Vagococcus lutrae strain AT15]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQESGTDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=686720 M2904_RS07380 WP_023606928.1 1488332..1488835(-) (ssbA) [Vagococcus lutrae strain AT15]
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAACGGTGTCGCTGTTGC
AACATTCACATTAGCAATTGATCGTCCATTTACAAATCAAAGCGGTAATCGCGAAGCTGATTTTATCAACACGGTGATTT
GGCGAAAACCAGCAGAAACGCTGGCTAATTACGCACGAAAAGGGACTCTGATTGGTGTGGTAGGACGTATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTCTATGTGACAGAAGTGGTAGCAGATAGTTTCCAATTCTTAGAGTCGAAGTC
AGTTAATGAACAACGACGTCAAGAATCTGGTACAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAATCAT
CATCTTCAATGCCACAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATTGATATC
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V6Q3E5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.371