Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ORM93_RS16340 Genome accession   NZ_CP111098
Coordinates   3203790..3204326 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain RM6067W     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3198790..3209326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORM93_RS16320 (ORM93_16240) soxR 3200519..3200983 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ORM93_RS16325 (ORM93_16245) soxS 3201069..3201392 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ORM93_RS16330 (ORM93_16250) pdeC 3201395..3202981 (-) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  ORM93_RS16335 (ORM93_16255) yjcB 3203410..3203691 (+) 282 WP_001295689.1 YjcB family protein -
  ORM93_RS16340 (ORM93_16260) ssb 3203790..3204326 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ORM93_RS16345 (ORM93_16265) uvrA 3204581..3207403 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  ORM93_RS16350 (ORM93_16270) yjbR 3207438..3207794 (-) 357 WP_000155652.1 MmcQ/YjbR family DNA-binding protein -
  ORM93_RS16355 (ORM93_16275) yjbQ 3207798..3208214 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ORM93_RS16360 (ORM93_16280) aphA 3208325..3209038 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=686635 ORM93_RS16340 WP_000168305.1 3203790..3204326(-) (ssb) [Escherichia coli strain RM6067W]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=686635 ORM93_RS16340 WP_000168305.1 3203790..3204326(-) (ssb) [Escherichia coli strain RM6067W]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489