Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M2908_RS06335 Genome accession   NZ_CP097045
Coordinates   1330117..1330620 (+) Length   167 a.a.
NCBI ID   WP_126762176.1    Uniprot ID   A0AAE9XMW7
Organism   Vagococcus lutrae strain AT32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1325148..1334311 1330117..1330620 within 0


Gene organization within MGE regions


Location: 1325148..1334311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2908_RS06320 (M2908_06320) gyrB 1325148..1327103 (+) 1956 WP_222316953.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  M2908_RS06325 (M2908_06325) gyrA 1327127..1329604 (+) 2478 WP_248852016.1 DNA gyrase subunit A -
  M2908_RS06330 (M2908_06330) rpsF 1329775..1330074 (+) 300 WP_126762178.1 30S ribosomal protein S6 -
  M2908_RS06335 (M2908_06335) ssbA 1330117..1330620 (+) 504 WP_126762176.1 single-stranded DNA-binding protein Machinery gene
  M2908_RS06340 (M2908_06340) rpsR 1330642..1330881 (+) 240 WP_126762174.1 30S ribosomal protein S18 -
  M2908_RS06345 (M2908_06345) rplI 1331026..1331478 (+) 453 WP_023606930.1 50S ribosomal protein L9 -
  M2908_RS06350 (M2908_06350) dnaB 1331508..1332869 (+) 1362 WP_023606931.1 replicative DNA helicase -
  M2908_RS06355 (M2908_06355) - 1333016..1334311 (-) 1296 WP_248852017.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18502.39 Da        Isoelectric Point: 4.9114

>NTDB_id=686588 M2908_RS06335 WP_126762176.1 1330117..1330620(+) (ssbA) [Vagococcus lutrae strain AT32]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQGSGSDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=686588 M2908_RS06335 WP_126762176.1 1330117..1330620(+) (ssbA) [Vagococcus lutrae strain AT32]
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAATGGTGTCGCTGTTGC
AACATTCACCTTGGCAATCGATCGTCCATTTACAAATCAAAGTGGTAATCGTGAAGCAGATTTTATCAACACGGTGATTT
GGCGAAAGCCCGCAGAGACATTGGCTAATTATGCACGAAAAGGAACTTTAATTGGTGTTGTAGGACGTATTCAAACACGT
AACTATGAAAACCAACAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCAGATAGTTTCCAATTCTTAGAGTCGAAGTC
AGTCAATGAACAACGACGTCAAGGCTCTGGTTCAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAGTCAT
CATCTTCAATGCCTCAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATAGATATC
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

59.649

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.371