Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M2909_RS05925 Genome accession   NZ_CP097044
Coordinates   1191010..1192263 (+) Length   417 a.a.
NCBI ID   WP_248848409.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT33     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1186010..1197263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2909_RS05900 (M2909_05900) - 1186105..1187376 (+) 1272 WP_248848414.1 pitrilysin family protein -
  M2909_RS05905 (M2909_05905) - 1187366..1188667 (+) 1302 WP_248851984.1 pitrilysin family protein -
  M2909_RS05910 (M2909_05910) - 1188670..1189395 (+) 726 WP_248848412.1 SDR family NAD(P)-dependent oxidoreductase -
  M2909_RS05915 (M2909_05915) - 1189420..1190268 (+) 849 WP_248851983.1 RodZ domain-containing protein -
  M2909_RS05920 (M2909_05920) pgsA 1190292..1190870 (+) 579 WP_248848410.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M2909_RS05925 (M2909_05925) cinA 1191010..1192263 (+) 1254 WP_248848409.1 competence/damage-inducible protein A Machinery gene
  M2909_RS05930 (M2909_05930) recA 1192349..1193386 (+) 1038 WP_023605862.1 recombinase RecA Machinery gene
  M2909_RS05935 (M2909_05935) rny 1193605..1195164 (+) 1560 WP_126762880.1 ribonuclease Y -
  M2909_RS05940 (M2909_05940) - 1195249..1196544 (-) 1296 WP_248857197.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45699.90 Da        Isoelectric Point: 4.5729

>NTDB_id=686552 M2909_RS05925 WP_248848409.1 1191010..1192263(+) (cinA) [Vagococcus lutrae strain AT33]
MRAEIIAVGTELLIGQVVNTNATFLSEELVGIGYDIYYHSVVGDNPERLKELIGQASQRSELIVLCGGLGPTEDDLTRDV
LADYLKEPMVLDPEGYDKIATYMTRSGREMTGNNRRQALTIQGGQAIPNDTGLAVGTFYQAETTSYLVLPGPPRELKPMF
YHHVIPLLKQQLPQTDQLYSRVLRFFGIGESQLVLELETLIHEQTNPTIAPYAGDTEVRLRLTVKATDETTANEMLDEME
EKIMSQVGDYFYGYGEENSLIKETVKALKAAKQTVASAESLTAGMFMSALGDVPGVSSVFNGGFVTYTNEMKSCLLKIDS
ALLAQHGAVSEACACAMAEQARVLTKSDYGVALTGVAGPDKSEGEPVGSVWIGLSSAISGTQAYHFQLQRDRQYIRQSAM
MRAMDLLRRQVIAENHD

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=686552 M2909_RS05925 WP_248848409.1 1191010..1192263(+) (cinA) [Vagococcus lutrae strain AT33]
ATGCGAGCAGAAATTATCGCAGTGGGTACGGAGCTATTAATTGGCCAAGTGGTTAATACCAATGCGACTTTTTTATCAGA
AGAATTAGTGGGGATTGGTTACGATATTTATTATCACAGTGTGGTAGGAGATAACCCAGAGCGTTTAAAAGAGTTAATTG
GACAAGCCTCTCAGAGAAGTGAATTGATTGTGTTGTGTGGGGGATTAGGACCAACAGAAGATGATTTAACGCGAGATGTG
TTAGCTGATTATTTAAAAGAGCCGATGGTGTTAGATCCAGAGGGTTACGATAAAATTGCTACCTATATGACACGCTCTGG
TCGCGAGATGACGGGAAATAATCGTAGGCAAGCGTTAACGATTCAAGGAGGTCAAGCGATACCGAATGATACAGGCTTGG
CAGTCGGGACTTTTTATCAAGCTGAGACGACGAGTTATTTAGTCTTACCAGGACCTCCACGTGAGTTAAAACCAATGTTT
TATCATCATGTTATCCCATTGTTAAAGCAGCAGTTACCTCAAACAGACCAACTGTATTCTCGTGTATTACGCTTTTTTGG
TATCGGGGAGTCACAGTTAGTTTTAGAATTAGAAACATTAATTCACGAGCAAACCAATCCGACCATTGCGCCATATGCAG
GAGATACAGAAGTTCGTTTACGACTGACAGTCAAAGCAACAGATGAGACAACAGCAAATGAGATGCTAGATGAGATGGAA
GAAAAAATTATGTCTCAAGTAGGGGATTATTTCTATGGTTATGGGGAAGAAAATAGTTTGATTAAAGAAACCGTCAAGGC
GTTAAAAGCCGCGAAGCAAACGGTCGCTTCGGCCGAAAGTTTGACTGCCGGGATGTTTATGAGTGCATTGGGAGACGTTC
CCGGTGTTTCTAGTGTCTTTAATGGTGGCTTTGTCACATATACGAATGAGATGAAAAGTTGCTTATTAAAGATTGATTCA
GCTTTGCTTGCTCAACACGGGGCTGTTAGTGAGGCGTGTGCGTGTGCGATGGCAGAACAGGCTCGTGTGTTAACAAAGAG
TGATTATGGCGTAGCATTAACAGGCGTAGCAGGTCCAGATAAAAGTGAGGGTGAGCCTGTAGGAAGTGTGTGGATTGGCC
TTTCTTCTGCGATAAGTGGGACACAGGCTTATCATTTTCAACTTCAGCGAGACCGTCAATATATTCGGCAAAGTGCCATG
ATGCGCGCAATGGACTTATTACGTCGTCAAGTGATAGCAGAAAATCACGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.118

100

0.508
  cinA Streptococcus pneumoniae R6

49.645

100

0.504
  cinA Streptococcus pneumoniae Rx1

49.645

100

0.504
  cinA Streptococcus mitis NCTC 12261

49.409

100

0.501
  cinA Streptococcus mitis SK321

49.409

100

0.501
  cinA Streptococcus pneumoniae D39

49.409

100

0.501
  cinA Streptococcus mutans UA159

48.21

100

0.484
  cinA Bacillus subtilis subsp. subtilis str. 168

47.607

95.204

0.453
  cinA Streptococcus suis isolate S10

42.961

98.801

0.424