Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ORM94_RS16000 Genome accession   NZ_CP111095
Coordinates   3112441..3112977 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain TW14588     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3107441..3117977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORM94_RS15980 (ORM94_15905) soxR 3109170..3109634 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  ORM94_RS15985 (ORM94_15910) soxS 3109720..3110043 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ORM94_RS15990 (ORM94_15915) pdeC 3110046..3111632 (-) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  ORM94_RS15995 (ORM94_15920) yjcB 3112061..3112342 (+) 282 WP_001295689.1 YjcB family protein -
  ORM94_RS16000 (ORM94_15925) ssb 3112441..3112977 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ORM94_RS16005 (ORM94_15930) uvrA 3113232..3116054 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  ORM94_RS16010 (ORM94_15935) yjbR 3116089..3116445 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ORM94_RS16015 (ORM94_15940) yjbQ 3116449..3116865 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ORM94_RS16020 (ORM94_15945) aphA 3116976..3117689 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=686552 ORM94_RS16000 WP_000168305.1 3112441..3112977(-) (ssb) [Escherichia coli strain TW14588]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=686552 ORM94_RS16000 WP_000168305.1 3112441..3112977(-) (ssb) [Escherichia coli strain TW14588]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489