Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M0209_RS13745 Genome accession   NZ_CP096972
Coordinates   2808431..2808952 (-) Length   173 a.a.
NCBI ID   WP_258888831.1    Uniprot ID   -
Organism   Sphingomonas sp. SUN039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2803431..2813952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0209_RS13725 (M0209_13705) - 2804322..2806586 (+) 2265 WP_258888827.1 NADP-dependent malic enzyme -
  M0209_RS13730 (M0209_13710) - 2806750..2807226 (-) 477 WP_258888828.1 outer membrane protein assembly factor BamE -
  M0209_RS13735 (M0209_13715) - 2807303..2807818 (+) 516 WP_258888829.1 ubiquinol-cytochrome C chaperone family protein -
  M0209_RS13740 (M0209_13720) - 2807815..2808333 (+) 519 WP_258888830.1 DUF177 domain-containing protein -
  M0209_RS13745 (M0209_13725) ssb 2808431..2808952 (-) 522 WP_258888831.1 single-stranded DNA-binding protein Machinery gene
  M0209_RS13750 (M0209_13730) - 2808962..2810803 (-) 1842 WP_258889647.1 ferrous iron transporter B -
  M0209_RS13755 (M0209_13735) - 2810839..2811081 (-) 243 WP_258888832.1 FeoA family protein -
  M0209_RS13760 (M0209_13740) - 2811165..2811803 (+) 639 WP_258888833.1 YoaK family protein -
  M0209_RS13765 (M0209_13745) - 2811800..2812462 (-) 663 WP_258889648.1 COQ9 family protein -
  M0209_RS13770 (M0209_13750) - 2812562..2813158 (+) 597 WP_258888834.1 urate hydroxylase PuuD -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18404.88 Da        Isoelectric Point: 5.3523

>NTDB_id=685806 M0209_RS13745 WP_258888831.1 2808431..2808952(-) (ssb) [Sphingomonas sp. SUN039]
MAGSVNKVILVGNLGKDPESRSFQNGGKVVSFSVATSESWKDKNSGERKDRTEWHNVSIFSEGLARVAEQYLKKGSKVYL
EGQLETRKWQDKDGNDRYTTDVVLRNFNSSMVLLDGRDSGGGSRGGGGGGDDWNRDEGGRGSGGGNYGGGGASRGGGSRP
SAFDSDLDDDVPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=685806 M0209_RS13745 WP_258888831.1 2808431..2808952(-) (ssb) [Sphingomonas sp. SUN039]
GTGGCAGGCAGCGTCAACAAGGTCATTCTCGTCGGCAATCTGGGCAAAGACCCTGAGTCGCGGTCGTTCCAGAACGGCGG
CAAAGTGGTGTCGTTCAGCGTCGCGACGTCGGAAAGCTGGAAGGACAAGAATTCGGGCGAGCGCAAGGATCGCACCGAAT
GGCACAATGTCTCGATCTTCAGCGAAGGCCTGGCCCGCGTCGCCGAACAATATCTCAAAAAGGGGTCGAAAGTGTACCTC
GAAGGCCAGCTCGAAACCCGCAAGTGGCAGGACAAGGACGGCAACGACCGCTACACGACCGACGTCGTGCTGCGGAATTT
CAACTCGTCGATGGTCCTGCTCGACGGTCGTGACAGCGGTGGCGGATCGCGTGGCGGCGGCGGTGGTGGCGACGACTGGA
ACCGCGACGAGGGCGGACGCGGTTCGGGCGGCGGCAATTATGGCGGCGGCGGAGCTTCGCGCGGTGGCGGAAGCCGTCCG
AGCGCGTTCGATTCGGACTTGGATGATGATGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.52
  ssb Vibrio cholerae strain A1552

45.087

100

0.451
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.439
  ssb Neisseria meningitidis MC58

41.341

100

0.428