Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M0208_RS11290 Genome accession   NZ_CP096971
Coordinates   2347590..2348111 (-) Length   173 a.a.
NCBI ID   WP_258891796.1    Uniprot ID   -
Organism   Sphingomonas sp. SUN019     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2342590..2353111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0208_RS11265 (M0208_11250) - 2343468..2344583 (+) 1116 WP_258891792.1 homoserine O-acetyltransferase -
  M0208_RS11270 (M0208_11255) - 2344580..2345011 (+) 432 WP_258891793.1 GNAT family N-acetyltransferase -
  M0208_RS11275 (M0208_11260) metW 2345008..2345607 (+) 600 WP_258891794.1 methionine biosynthesis protein MetW -
  M0208_RS11280 (M0208_11265) - 2345640..2346032 (+) 393 WP_258891795.1 response regulator -
  M0208_RS11285 (M0208_11270) - 2346007..2347563 (-) 1557 WP_408988147.1 sensor histidine kinase -
  M0208_RS11290 (M0208_11275) ssb 2347590..2348111 (-) 522 WP_258891796.1 single-stranded DNA-binding protein Machinery gene
  M0208_RS11295 (M0208_11280) - 2348127..2349986 (-) 1860 WP_258891797.1 ferrous iron transporter B -
  M0208_RS11300 (M0208_11285) - 2350001..2350252 (-) 252 WP_258891798.1 FeoA family protein -
  M0208_RS11305 (M0208_11290) - 2350359..2352446 (+) 2088 WP_258891799.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18228.92 Da        Isoelectric Point: 5.3323

>NTDB_id=685800 M0208_RS11290 WP_258891796.1 2347590..2348111(-) (ssb) [Sphingomonas sp. SUN019]
MAGSVNKVILVGNLGRDPESRSFQNGGKVVELRIATSENWKDKNSGERKEKTEWHTVKVFNEGLANVAERYLRKGSKVYI
EGALTTRKWQDQSGADRYSTEVVLQGFNSVLTMLDGAPGGGGGNVGSGRDDWGGAPSGGDDFGGGRSGGAGRTGASAQTR
GGFADDLDDDVPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=685800 M0208_RS11290 WP_258891796.1 2347590..2348111(-) (ssb) [Sphingomonas sp. SUN019]
ATGGCGGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGAGATCCCGAGAGCCGCAGCTTCCAGAACGGCGG
CAAGGTCGTCGAACTGCGTATCGCCACGTCCGAGAACTGGAAGGACAAGAATTCGGGCGAGCGCAAGGAAAAGACCGAAT
GGCATACCGTGAAGGTCTTCAACGAAGGCCTGGCCAACGTCGCCGAACGCTATCTGCGCAAGGGCAGCAAGGTCTATATC
GAGGGTGCGCTGACGACCCGCAAATGGCAGGATCAGTCGGGTGCGGACCGTTATTCGACCGAGGTCGTGCTGCAGGGCTT
CAACAGCGTGCTGACGATGCTGGACGGCGCACCGGGCGGTGGTGGCGGGAACGTCGGCAGCGGGCGTGACGATTGGGGCG
GCGCGCCGTCCGGCGGGGACGACTTCGGCGGCGGGCGCAGCGGTGGCGCAGGCCGCACCGGCGCATCGGCCCAGACACGC
GGCGGGTTCGCCGATGATCTCGACGACGACGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.323

100

0.561
  ssb Vibrio cholerae strain A1552

49.714

100

0.503
  ssb Neisseria gonorrhoeae MS11

37.629

100

0.422
  ssb Neisseria meningitidis MC58

37.368

100

0.41