Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M2J84_RS18165 Genome accession   NZ_CP096918
Coordinates   3850756..3851322 (-) Length   188 a.a.
NCBI ID   WP_042415868.1    Uniprot ID   A0AA42W1W0
Organism   Comamonas aquatica strain NY8661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3845756..3856322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J84_RS18140 (M2J84_18155) hprK 3846099..3847064 (+) 966 WP_042415854.1 HPr(Ser) kinase/phosphatase -
  M2J84_RS18145 (M2J84_18160) fur 3847132..3847560 (-) 429 WP_042415857.1 ferric iron uptake transcriptional regulator -
  M2J84_RS18150 (M2J84_18165) - 3847708..3848253 (+) 546 WP_042415860.1 outer membrane protein assembly factor BamE -
  M2J84_RS18155 (M2J84_18170) dapB 3848352..3849179 (+) 828 WP_270149978.1 4-hydroxy-tetrahydrodipicolinate reductase -
  M2J84_RS18160 (M2J84_18175) - 3849230..3850588 (-) 1359 WP_270149980.1 diguanylate cyclase -
  M2J84_RS18165 (M2J84_18180) ssb 3850756..3851322 (-) 567 WP_042415868.1 single-stranded DNA-binding protein Machinery gene
  M2J84_RS18170 (M2J84_18185) - 3851594..3852775 (-) 1182 WP_270152735.1 MFS transporter -
  M2J84_RS18175 (M2J84_18190) uvrA 3852975..3856022 (+) 3048 WP_270149983.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20454.61 Da        Isoelectric Point: 5.9554

>NTDB_id=685161 M2J84_RS18165 WP_042415868.1 3850756..3851322(-) (ssb) [Comamonas aquatica strain NY8661]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKESTEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADSMQMLGSRQGMGGGNQNQGYGDDAGYGDNGGYEAQAPRRAPAPAPRQAAPQQRMAP
PAAAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=685161 M2J84_RS18165 WP_042415868.1 3850756..3851322(-) (ssb) [Comamonas aquatica strain NY8661]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACTTGGGGCGCGACCCCGAAATGCGCACCTTCCCCAGCGGGGACCA
GGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAATCCACCGAGTGGC
ACCGCGTGGTCTTCAATGGCCGCCTGGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTGGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCACCGGCCAGGAGCGCTACGCGACCGAAATCCGTGCCGACAGCATGCA
GATGTTGGGCAGCCGCCAGGGCATGGGCGGTGGCAACCAGAACCAGGGCTATGGCGATGACGCCGGCTATGGCGACAACG
GTGGCTATGAGGCCCAAGCCCCACGCCGCGCGCCAGCGCCCGCACCGCGCCAGGCCGCACCCCAGCAGCGCATGGCACCG
CCCGCGGCGGCCCCCGCGCCCATGGCCCCACCGCCCCAGCGCGCGGCTTCCGGCTTTGACGACATGGACGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.03

100

0.559
  ssb Vibrio cholerae strain A1552

52.062

100

0.537
  ssb Neisseria gonorrhoeae MS11

43.915

100

0.441
  ssb Neisseria meningitidis MC58

43.386

100

0.436