Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OM089_RS03890 Genome accession   NZ_CP110368
Coordinates   804339..804836 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 18083286     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 799339..809836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM089_RS03875 bfr 799347..799811 (+) 465 WP_003093668.1 bacterioferritin -
  OM089_RS03880 uvrA 799883..802720 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  OM089_RS03885 - 802934..804322 (+) 1389 WP_009316331.1 MFS transporter -
  OM089_RS03890 ssb 804339..804836 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  OM089_RS03895 pchA 804925..806355 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  OM089_RS03900 pchB 806352..806657 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  OM089_RS03905 pchC 806657..807412 (-) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  OM089_RS03910 pchD 807409..809052 (-) 1644 WP_003162042.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=684797 OM089_RS03890 WP_003114685.1 804339..804836(+) (ssb) [Pseudomonas aeruginosa strain 18083286]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=684797 OM089_RS03890 WP_003114685.1 804339..804836(+) (ssb) [Pseudomonas aeruginosa strain 18083286]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515