Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   LFL98_RS14140 Genome accession   NZ_CP110365
Coordinates   2696293..2696988 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain HY2-62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2691293..2701988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS14115 (LFL98_14120) minD 2692229..2693035 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  LFL98_RS14120 (LFL98_14125) minC 2693037..2693717 (-) 681 WP_017696329.1 septum site-determining protein MinC -
  LFL98_RS14125 (LFL98_14130) mreD 2693770..2694288 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  LFL98_RS14130 (LFL98_14135) mreC 2694285..2695157 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  LFL98_RS14135 (LFL98_14140) mreB 2695188..2696201 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  LFL98_RS14140 (LFL98_14145) ysxA/radC 2696293..2696988 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  LFL98_RS14145 (LFL98_14150) maf 2697025..2697594 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  LFL98_RS14150 (LFL98_14155) spoIIB 2697747..2698745 (-) 999 WP_277736570.1 stage II sporulation protein SpoIIB -
  LFL98_RS14155 (LFL98_14160) comC 2698879..2699625 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  LFL98_RS14160 (LFL98_14165) folC 2699766..2701058 (-) 1293 WP_277736571.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=684744 LFL98_RS14140 WP_003246034.1 2696293..2696988(-) (ysxA/radC) [Bacillus subtilis strain HY2-62]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=684744 LFL98_RS14140 WP_003246034.1 2696293..2696988(-) (ysxA/radC) [Bacillus subtilis strain HY2-62]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGAATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424