Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M1I95_RS00110 Genome accession   NZ_CP096885
Coordinates   19781..20317 (+) Length   178 a.a.
NCBI ID   WP_053429895.1    Uniprot ID   A0A0M0G1C7
Organism   Rossellomorea marisflavi strain B3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 14781..25317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS00080 (M1I95_00080) - 15609..15785 (-) 177 WP_160316608.1 hypothetical protein -
  M1I95_RS00085 (M1I95_00085) yyaC 15882..16499 (-) 618 WP_318548670.1 spore protease YyaC -
  M1I95_RS00090 (M1I95_00090) - 16714..17637 (+) 924 WP_318548671.1 mechanosensitive ion channel family protein -
  M1I95_RS00095 (M1I95_00095) - 17652..17849 (+) 198 WP_048004584.1 DUF951 domain-containing protein -
  M1I95_RS00100 (M1I95_00100) ychF 18129..19229 (+) 1101 WP_048004585.1 redox-regulated ATPase YchF -
  M1I95_RS00105 (M1I95_00105) rpsF 19438..19725 (+) 288 WP_053429896.1 30S ribosomal protein S6 -
  M1I95_RS00110 (M1I95_00110) ssbA 19781..20317 (+) 537 WP_053429895.1 single-stranded DNA-binding protein Machinery gene
  M1I95_RS00115 (M1I95_00115) rpsR 20361..20597 (+) 237 WP_048004588.1 30S ribosomal protein S18 -
  M1I95_RS00120 (M1I95_00120) - 20705..21664 (-) 960 WP_318548672.1 MBL fold metallo-hydrolase -
  M1I95_RS00125 (M1I95_00125) - 21804..23843 (+) 2040 WP_318548673.1 methyl-accepting chemotaxis protein -
  M1I95_RS00130 (M1I95_00130) - 24035..24970 (+) 936 WP_318548674.1 YybS family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19484.18 Da        Isoelectric Point: 4.7821

>NTDB_id=684735 M1I95_RS00110 WP_053429895.1 19781..20317(+) (ssbA) [Rossellomorea marisflavi strain B3]
MMNRVVLVGRLTKDPELKYTPSGVAVASFTLAVNRSFTNQSGEREADFINCVVWRRPAENVANFLKKGSLAGVDGRIQTR
NFEGQDGRRVFMTEVVAESVQFLEPRSANQGGDRGGSPSYSGGGGGYQQGNQGGNSFGQNQNQQQRNNNNNNNYTRVDED
PFANDGQPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=684735 M1I95_RS00110 WP_053429895.1 19781..20317(+) (ssbA) [Rossellomorea marisflavi strain B3]
ATGATGAACCGAGTTGTATTAGTGGGCCGATTAACCAAAGACCCTGAACTAAAATATACTCCAAGCGGAGTGGCTGTTGC
CTCATTCACACTGGCAGTGAATCGTTCTTTTACGAATCAATCAGGTGAACGGGAAGCAGATTTTATTAACTGTGTTGTTT
GGCGCCGACCTGCCGAAAACGTAGCGAACTTCCTTAAGAAAGGAAGCCTGGCCGGCGTTGACGGTCGAATCCAGACCCGT
AACTTCGAAGGTCAGGATGGACGACGCGTGTTCATGACGGAAGTCGTGGCCGAAAGCGTTCAATTCCTTGAGCCTCGCAG
TGCGAATCAAGGTGGAGATCGCGGCGGAAGCCCAAGCTATTCTGGCGGCGGTGGTGGTTACCAACAGGGTAACCAAGGTG
GTAACTCATTCGGCCAGAATCAGAATCAACAACAGCGCAACAACAATAATAACAATAACTACACTCGCGTAGATGAAGAT
CCATTCGCAAATGACGGTCAGCCGATCGACATTTCCGATGATGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0G1C7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.613

100

0.708
  ssb Latilactobacillus sakei subsp. sakei 23K

52.432

100

0.545
  ssb Glaesserella parasuis strain SC1401

36.17

100

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.522

63.483

0.365