Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SPYCA_RS14720 Genome accession   NZ_AP017898
Coordinates   3040221..3040757 (+) Length   178 a.a.
NCBI ID   WP_120221559.1    Uniprot ID   -
Organism   Sphingopyxis sp. FD7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3035221..3045757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYCA_RS14695 (SPYCA_2948) - 3035344..3036012 (+) 669 WP_120221554.1 hypothetical protein -
  SPYCA_RS14700 (SPYCA_2949) - 3036079..3037164 (-) 1086 WP_120221555.1 alkene reductase -
  SPYCA_RS14705 (SPYCA_2950) - 3037365..3038030 (+) 666 WP_120221556.1 COQ9 family protein -
  SPYCA_RS14710 (SPYCA_2951) - 3038086..3038331 (+) 246 WP_120221557.1 FeoA family protein -
  SPYCA_RS14715 (SPYCA_2952) - 3038328..3040187 (+) 1860 WP_120221558.1 ferrous iron transporter B -
  SPYCA_RS14720 (SPYCA_2953) ssb 3040221..3040757 (+) 537 WP_120221559.1 single-stranded DNA-binding protein Machinery gene
  SPYCA_RS14725 (SPYCA_2954) - 3040769..3041239 (+) 471 WP_120221560.1 MmcB family DNA repair protein -
  SPYCA_RS14730 (SPYCA_2955) - 3041365..3041979 (-) 615 WP_120221561.1 riboflavin synthase -
  SPYCA_RS14735 (SPYCA_2956) ribD 3041987..3042949 (-) 963 WP_120221562.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  SPYCA_RS14740 (SPYCA_2957) - 3042984..3043448 (-) 465 WP_120221563.1 hypothetical protein -
  SPYCA_RS14745 (SPYCA_2958) - 3043729..3044190 (-) 462 WP_120221564.1 thioesterase family protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18419.11 Da        Isoelectric Point: 5.0093

>NTDB_id=68445 SPYCA_RS14720 WP_120221559.1 3040221..3040757(+) (ssb) [Sphingopyxis sp. FD7]
MAGSVNKVILIGNLGADPEIKSFQNGGKIANIRIATSETWKDRMTGERKERTEWHNVVINGEGLVGVVERYLKKGSKVYV
EGSLRTRKWQDRDGNDRYTTEVVIAGMGGNLTMLDGAPGGGSRGGGDSWNQGGGSSGGWDQGGGAGGGSGGGWNQGGGGS
SGGGRAPFDDDLDDDVPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=68445 SPYCA_RS14720 WP_120221559.1 3040221..3040757(+) (ssb) [Sphingopyxis sp. FD7]
ATGGCTGGCAGCGTCAACAAGGTAATTCTCATCGGCAACCTCGGCGCCGACCCCGAAATCAAGTCGTTCCAGAATGGCGG
CAAGATCGCCAATATCCGCATCGCGACGAGCGAGACGTGGAAGGACCGGATGACCGGCGAGCGCAAGGAGCGCACCGAAT
GGCATAATGTCGTCATCAACGGCGAAGGACTGGTCGGCGTCGTCGAACGCTATCTCAAAAAAGGCAGCAAGGTTTATGTC
GAGGGCAGCCTGCGCACCCGCAAGTGGCAGGACCGCGACGGCAACGACCGCTATACGACCGAGGTGGTGATCGCCGGCAT
GGGCGGCAATCTGACGATGCTCGACGGCGCGCCGGGCGGCGGCTCGCGCGGCGGCGGCGACAGCTGGAACCAGGGCGGCG
GGTCGTCGGGCGGCTGGGACCAGGGCGGCGGCGCCGGTGGCGGGTCGGGCGGCGGCTGGAACCAGGGCGGCGGCGGATCG
TCGGGCGGCGGACGCGCGCCGTTCGACGACGATCTGGATGACGACGTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.277

100

0.489
  ssb Vibrio cholerae strain A1552

47.753

100

0.478
  ssb Neisseria gonorrhoeae MS11

36.813

100

0.376
  ssb Neisseria meningitidis MC58

36.813

100

0.376

Multiple sequence alignment