Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   MZK36_RS09660 Genome accession   NZ_CP096809
Coordinates   1879469..1879882 (-) Length   137 a.a.
NCBI ID   WP_000265630.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP007     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1874469..1884882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZK36_RS09630 (MZK36_09565) - 1875171..1875995 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  MZK36_RS09635 (MZK36_09570) rnpA 1875970..1876341 (-) 372 WP_000739246.1 ribonuclease P protein component -
  MZK36_RS09640 - 1876358..1876489 (-) 132 WP_000768904.1 hypothetical protein -
  MZK36_RS09645 (MZK36_09575) - 1876490..1877680 (-) 1191 WP_000167766.1 acetate kinase -
  MZK36_RS09650 (MZK36_09580) comYH 1877731..1878684 (-) 954 WP_000345119.1 class I SAM-dependent methyltransferase Machinery gene
  MZK36_RS09655 (MZK36_09585) - 1878745..1879332 (-) 588 WP_000679774.1 class I SAM-dependent methyltransferase -
  MZK36_RS09660 (MZK36_09590) comGG/cglG 1879469..1879882 (-) 414 WP_000265630.1 competence type IV pilus minor pilin ComGG Machinery gene
  MZK36_RS09665 (MZK36_09595) comGF/cglF 1879860..1880321 (-) 462 WP_000250545.1 competence type IV pilus minor pilin ComGF Machinery gene
  MZK36_RS09670 (MZK36_09600) comGE/cglE 1880284..1880586 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  MZK36_RS09675 (MZK36_09605) comGD/cglD 1880549..1880953 (-) 405 WP_000588005.1 competence type IV pilus minor pilin ComGD Machinery gene
  MZK36_RS09680 (MZK36_09610) comGC/cglC 1880946..1881272 (-) 327 WP_000738650.1 comG operon protein ComGC Machinery gene
  MZK36_RS09685 (MZK36_09615) comGB/cglB 1881274..1882290 (-) 1017 WP_013193332.1 competence type IV pilus assembly protein ComGB Machinery gene
  MZK36_RS09690 (MZK36_09620) comGA/cglA/cilD 1882238..1883179 (-) 942 WP_000249567.1 competence type IV pilus ATPase ComGA Machinery gene
  MZK36_RS09695 (MZK36_09625) - 1883255..1883620 (-) 366 WP_000286415.1 DUF1033 family protein -
  MZK36_RS09700 (MZK36_09630) - 1883771..1884829 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15892.29 Da        Isoelectric Point: 10.1695

>NTDB_id=684247 MZK36_RS09660 WP_000265630.1 1879469..1879882(-) (comGG/cglG) [Streptococcus pneumoniae strain SP007]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=684247 MZK36_RS09660 WP_000265630.1 1879469..1879882(-) (comGG/cglG) [Streptococcus pneumoniae strain SP007]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGGATAAGAGTCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACTGATTCAAGCGAAAAAGCGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

86.861

100

0.869

  comGG/cglG Streptococcus pneumoniae Rx1

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae D39

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae R6

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae TIGR4

95.726

85.401

0.818

  comGG/cglG Streptococcus mitis NCTC 12261

90.984

89.051

0.81

  comYG Streptococcus mutans UA140

40.299

97.81

0.394

  comYG Streptococcus mutans UA159

40.299

97.81

0.394