Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PALA44_RS03755 Genome accession   NZ_CP110350
Coordinates   819415..820089 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain PALA44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 814415..825089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA44_RS03730 (PALA44_00738) - 814914..816248 (+) 1335 WP_033939528.1 aspartate aminotransferase family protein -
  PALA44_RS03735 (PALA44_00739) - 816314..816676 (+) 363 WP_003096551.1 cupin domain-containing protein -
  PALA44_RS03740 (PALA44_00740) rpmG 816813..816968 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  PALA44_RS03745 (PALA44_00741) rpmB 816980..817216 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  PALA44_RS03750 (PALA44_00742) - 817572..819152 (+) 1581 WP_003096557.1 ABC transporter substrate-binding protein -
  PALA44_RS03755 (PALA44_00743) radC 819415..820089 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  PALA44_RS03760 (PALA44_00744) coaBC 820229..821437 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  PALA44_RS03765 (PALA44_00745) dut 821445..821900 (+) 456 WP_003096567.1 dUTP diphosphatase -
  PALA44_RS03770 (PALA44_00746) - 821937..824543 (+) 2607 WP_033939527.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=684251 PALA44_RS03755 WP_003096559.1 819415..820089(-) (radC) [Pseudomonas aeruginosa strain PALA44]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=684251 PALA44_RS03755 WP_003096559.1 819415..820089(-) (radC) [Pseudomonas aeruginosa strain PALA44]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCCTGGCGCTCATCGATGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCTCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397