NTDB

Overview

Name	recG	Type	Machinery gene
Locus tag	PALA44_RS03885	Genome accession	NZ_CP110350
Coordinates	843746..845821 (+)	Length	691 a.a.
NCBI ID	WP_033938975.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain PALA44
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 838746..850821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA44_RS03855 (PALA44_00763)	-	839168..839548 (+)	381	WP_003096609.1	RidA family protein	-
PALA44_RS03860 (PALA44_00764)	-	839603..840334 (+)	732	WP_031757073.1	hypothetical protein	-
PALA44_RS03865 (PALA44_00765)	-	840341..840961 (-)	621	WP_003096613.1	LysE family translocator	-
PALA44_RS03870 (PALA44_00766)	-	841028..841828 (-)	801	WP_003096615.1	AraC family transcriptional regulator	-
PALA44_RS03875 (PALA44_00767)	-	841828..842679 (-)	852	WP_003121310.1	SDR family oxidoreductase	-
PALA44_RS03880 (PALA44_00768)	oxyR	842817..843749 (+)	933	WP_003096622.1	oxidative stress transcriptional regulator OxyR	-
PALA44_RS03885 (PALA44_00769)	recG	843746..845821 (+)	2076	WP_033938975.1	ATP-dependent DNA helicase RecG	Machinery gene
PALA44_RS03890	-	845911..847320 (+)	1410	WP_033938976.1	aminoacyl-tRNA deacylase and HDOD domain-containing protein	-
PALA44_RS03895 (PALA44_00771)	-	847392..847784 (-)	393	WP_003096629.1	hypothetical protein	-
PALA44_RS03900 (PALA44_00772)	-	847920..848192 (-)	273	WP_003096630.1	HU family DNA-binding protein	-
PALA44_RS03905 (PALA44_00773)	alkT	848394..849548 (-)	1155	WP_003114369.1	rubredoxin-NAD(+) reductase AlkT	-
PALA44_RS03910 (PALA44_00774)	-	849600..849767 (-)	168	WP_003098329.1	rubredoxin	-
PALA44_RS03915 (PALA44_00775)	-	849951..850118 (-)	168	WP_003098330.1	rubredoxin	-
PALA44_RS03920 (PALA44_00776)	-	850252..850653 (-)	402	WP_003096637.1	heme-binding protein	-

Sequence

Protein

Download Length: 691 a.a. Molecular weight: 76106.81 Da Isoelectric Point: 7.4218

                                >NTDB_id=684252 PALA44_RS03885 WP_033938975.1 843746..845821(+) (recG) [Pseudomonas aeruginosa strain PALA44]

MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVGGVVAGADVVMGRRRSLL

VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR

LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR

EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV

ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR

FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE

GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA

SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG

LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide

Download Length: 2076 bp

                                >NTDB_id=684252 PALA44_RS03885 WP_033938975.1 843746..845821(+) (recG) [Pseudomonas aeruginosa strain PALA44]

ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG

CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCAC

TGCGGCCAGGGGCCGACGCGGTGGTCGGGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG

GTGCGCCTACAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGCCTCAAGCG

CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCATCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC

TGAACGGCGACGAACCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAAGGACTCACCCAGCAGCGC

CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGTCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG

CGATTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG

CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC

GAAGCCGTGCGTTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT

CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAACCGATGCTGCGCCTGG

TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG

GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA

AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG

TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC

TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC

CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC

GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA

GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAACTTACCTGCCAGGCCGCCGAGACCACCTACGA

AGAGCTTTCCTCGGCGCTGGGCGAACTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCTGTGGTGA

TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC

AGCCTGATGATCATCGAGAACCCTGAGCGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGCCGGGGCAG

CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA

CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC

CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGATCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT

GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

RecG wedge domain (RecG_wedge)

(12-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recG	Neisseria meningitidis strain C311	50.224	97.106	0.488
recG/mmsA	Streptococcus pneumoniae R6	40.868	96.671	0.395
recG/mmsA	Streptococcus pneumoniae R36A	40.868	96.671	0.395
recG	Bacillus subtilis subsp. subtilis str. 168	40.208	97.54	0.392

Detailed information NTG0684252