Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SNAG_RS09555 Genome accession   NZ_AP017652
Coordinates   1891590..1892252 (-) Length   220 a.a.
NCBI ID   WP_096408716.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1886590..1897252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS09535 (SNAG_1866) - 1887382..1888560 (-) 1179 WP_096408710.1 acetyl-CoA C-acetyltransferase -
  SNAG_RS09540 (SNAG_1867) - 1888579..1889427 (-) 849 WP_096408713.1 3-hydroxybutyryl-CoA dehydrogenase -
  SNAG_RS09545 (SNAG_1868) - 1889508..1890716 (-) 1209 WP_000201480.1 acyl-CoA dehydrogenase family protein -
  SNAG_RS09550 (SNAG_1869) raiA 1890962..1891510 (-) 549 WP_000599113.1 ribosome-associated translation inhibitor RaiA -
  SNAG_RS09555 (SNAG_1870) comFC/cflB 1891590..1892252 (-) 663 WP_096408716.1 ComF family protein Machinery gene
  SNAG_RS09560 (SNAG_1871) comFA/cflA 1892249..1893547 (-) 1299 WP_096408718.1 DEAD/DEAH box helicase Machinery gene
  SNAG_RS09565 (SNAG_1872) - 1893604..1894239 (+) 636 WP_096408721.1 YigZ family protein -
  SNAG_RS09570 (SNAG_1873) - 1894255..1894698 (+) 444 WP_096408724.1 PH domain-containing protein -
  SNAG_RS09575 (SNAG_1874) cysK 1894795..1895721 (+) 927 WP_096408726.1 cysteine synthase A -
  SNAG_RS09580 (SNAG_1875) tsf 1895811..1896851 (-) 1041 WP_096408729.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25249.17 Da        Isoelectric Point: 6.9789

>NTDB_id=68379 SNAG_RS09555 WP_096408716.1 1891590..1892252(-) (comFC/cflB) [Streptococcus sp. NPS 308]
MNCLLCGQTIKSDLIFCHLLLFKNENNYLCSDCESTFEKIGEDYCPNCMKTGLSTMCQDCKFWCKEKIRVDHNAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFAPVLANELKKYGDYQFVVIPLSPERLLERGFNQVEGLVEAAGFSFQDLLGKREETASSS
KNRSERLATEIPFFIKTEAPLPKKILVVDDIYTTGATVNRVKRLFEEAGALDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=68379 SNAG_RS09555 WP_096408716.1 1891590..1892252(-) (comFC/cflB) [Streptococcus sp. NPS 308]
ATGAACTGTTTATTATGTGGACAGACAATAAAGAGTGACTTGATATTTTGTCACCTTTTGCTGTTTAAGAATGAGAACAA
CTATCTTTGTTCAGATTGTGAGTCTACTTTTGAGAAAATTGGTGAGGACTATTGCCCGAACTGTATGAAAACAGGCCTGT
CAACTATGTGTCAAGATTGTAAATTTTGGTGTAAAGAAAAGATTCGAGTCGATCATAATGCAATCTTCACCTATAATCAA
GCTATGAAAGACTTCTTTAGTCGATATAAGTTTGATGGGGATTTTCTACTTAGAAAGGTTTTTGCTCCTGTTCTAGCTAA
TGAATTGAAAAAGTATGGAGACTATCAATTTGTTGTCATTCCCCTAAGTCCTGAAAGATTGCTTGAGAGGGGATTTAACC
AGGTTGAAGGTTTGGTTGAGGCAGCAGGGTTTTCTTTTCAAGATTTACTAGGGAAAAGAGAAGAGACGGCTAGTTCTTCT
AAAAATCGCTCGGAACGATTAGCTACCGAAATTCCATTTTTTATAAAAACTGAAGCCCCTCTTCCTAAGAAAATTTTGGT
TGTTGATGACATCTATACAACAGGTGCGACTGTCAATCGTGTGAAGCGTCTTTTTGAAGAAGCAGGAGCTTTGGATGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

77.727

100

0.777
  comFC/cflB Streptococcus mitis NCTC 12261

75.909

100

0.759
  comFC/cflB Streptococcus pneumoniae TIGR4

75.455

100

0.755
  comFC/cflB Streptococcus pneumoniae Rx1

75.455

100

0.755
  comFC/cflB Streptococcus pneumoniae D39

75.455

100

0.755
  comFC/cflB Streptococcus pneumoniae R6

75.455

100

0.755

Multiple sequence alignment