Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | M1S46_RS15975 | Genome accession | NZ_CP096753 |
| Coordinates | 3310023..3310376 (-) | Length | 117 a.a. |
| NCBI ID | WP_071211529.1 | Uniprot ID | A0A1S2G1T5 |
| Organism | Acinetobacter baumannii strain 5664 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3308550..3346782 | 3310023..3310376 | within | 0 |
Gene organization within MGE regions
Location: 3308550..3346782
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M1S46_RS15965 (M1S46_15965) | - | 3308550..3309710 (-) | 1161 | WP_001272508.1 | tyrosine-type recombinase/integrase | - |
| M1S46_RS15970 (M1S46_15970) | - | 3309799..3310002 (-) | 204 | WP_071211528.1 | hypothetical protein | - |
| M1S46_RS15975 (M1S46_15975) | ssb | 3310023..3310376 (-) | 354 | WP_071211529.1 | single-stranded DNA-binding protein | Machinery gene |
| M1S46_RS15980 (M1S46_15980) | - | 3310364..3310681 (-) | 318 | WP_000049659.1 | hypothetical protein | - |
| M1S46_RS15985 (M1S46_15985) | - | 3310684..3311202 (-) | 519 | WP_071211530.1 | hypothetical protein | - |
| M1S46_RS15990 (M1S46_15990) | - | 3311270..3311866 (-) | 597 | WP_000274818.1 | hypothetical protein | - |
| M1S46_RS15995 (M1S46_15995) | - | 3311891..3314608 (-) | 2718 | WP_071211531.1 | toprim domain-containing protein | - |
| M1S46_RS16000 (M1S46_16000) | - | 3314623..3314805 (-) | 183 | WP_001133583.1 | hypothetical protein | - |
| M1S46_RS16005 (M1S46_16005) | - | 3314808..3315041 (-) | 234 | WP_000023425.1 | hypothetical protein | - |
| M1S46_RS16010 (M1S46_16010) | - | 3315038..3315241 (-) | 204 | WP_071211532.1 | hypothetical protein | - |
| M1S46_RS16015 (M1S46_16015) | - | 3315324..3315668 (+) | 345 | WP_071211533.1 | hypothetical protein | - |
| M1S46_RS16020 (M1S46_16020) | - | 3315710..3316270 (-) | 561 | WP_071211547.1 | hypothetical protein | - |
| M1S46_RS16025 (M1S46_16025) | - | 3316281..3316451 (-) | 171 | WP_171259127.1 | hypothetical protein | - |
| M1S46_RS16030 (M1S46_16030) | - | 3316807..3317952 (+) | 1146 | WP_071211534.1 | hypothetical protein | - |
| M1S46_RS16035 (M1S46_16035) | - | 3318009..3318542 (+) | 534 | WP_071211535.1 | PAAR domain-containing protein | - |
| M1S46_RS16040 (M1S46_16040) | - | 3318548..3319159 (+) | 612 | WP_031966861.1 | hypothetical protein | - |
| M1S46_RS16045 (M1S46_16045) | - | 3319161..3319631 (+) | 471 | WP_071211536.1 | hypothetical protein | - |
| M1S46_RS16050 (M1S46_16050) | - | 3319743..3320030 (-) | 288 | WP_001214242.1 | ogr/Delta-like zinc finger family protein | - |
| M1S46_RS16060 (M1S46_16060) | - | 3320309..3321100 (+) | 792 | WP_071211537.1 | DNA adenine methylase | - |
| M1S46_RS16065 (M1S46_16065) | - | 3321097..3322317 (-) | 1221 | WP_071211538.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| M1S46_RS16070 (M1S46_16070) | - | 3322320..3322739 (-) | 420 | WP_000979932.1 | phage tail protein | - |
| M1S46_RS16075 (M1S46_16075) | - | 3322756..3326676 (-) | 3921 | WP_071211539.1 | phage tail protein | - |
| M1S46_RS20110 | - | 3326673..3326795 (-) | 123 | WP_079265489.1 | GpE family phage tail protein | - |
| M1S46_RS16085 (M1S46_16085) | - | 3326804..3327169 (-) | 366 | WP_062936698.1 | phage tail assembly protein | - |
| M1S46_RS16090 (M1S46_16090) | - | 3327235..3327750 (-) | 516 | WP_001207577.1 | phage major tail tube protein | - |
| M1S46_RS16095 (M1S46_16095) | - | 3327766..3328935 (-) | 1170 | WP_000785699.1 | phage tail sheath protein | - |
| M1S46_RS16100 (M1S46_16100) | - | 3329045..3329539 (-) | 495 | WP_062936696.1 | hypothetical protein | - |
| M1S46_RS16105 (M1S46_16105) | - | 3329539..3334125 (-) | 4587 | WP_071211540.1 | phage tail protein | - |
| M1S46_RS16110 (M1S46_16110) | - | 3334126..3334662 (-) | 537 | WP_071211541.1 | phage tail protein I | - |
| M1S46_RS16115 (M1S46_16115) | - | 3334662..3335579 (-) | 918 | WP_000117640.1 | baseplate J/gp47 family protein | - |
| M1S46_RS16120 (M1S46_16120) | - | 3335576..3335926 (-) | 351 | WP_000062375.1 | GPW/gp25 family protein | - |
| M1S46_RS16125 (M1S46_16125) | - | 3335923..3336513 (-) | 591 | WP_001026776.1 | phage baseplate assembly protein V | - |
| M1S46_RS16130 (M1S46_16130) | - | 3336901..3337362 (-) | 462 | WP_000774613.1 | phage virion morphogenesis protein | - |
| M1S46_RS16135 (M1S46_16135) | - | 3337365..3337895 (-) | 531 | WP_000735813.1 | phage tail protein | - |
| M1S46_RS16140 (M1S46_16140) | - | 3337892..3338722 (-) | 831 | WP_000600985.1 | N-acetylmuramidase family protein | - |
| M1S46_RS16145 (M1S46_16145) | - | 3338719..3338976 (-) | 258 | WP_000604752.1 | phage holin family protein | - |
| M1S46_RS16150 (M1S46_16150) | - | 3338973..3339332 (-) | 360 | WP_001114932.1 | putative holin | - |
| M1S46_RS16155 (M1S46_16155) | - | 3339335..3339544 (-) | 210 | WP_001099130.1 | tail protein X | - |
| M1S46_RS16160 (M1S46_16160) | - | 3339541..3339990 (-) | 450 | WP_000011350.1 | head completion/stabilization protein | - |
| M1S46_RS16165 (M1S46_16165) | gpM | 3340097..3340843 (-) | 747 | WP_062936694.1 | phage terminase small subunit | - |
| M1S46_RS16170 (M1S46_16170) | - | 3340849..3341859 (-) | 1011 | WP_001247975.1 | phage major capsid protein, P2 family | - |
| M1S46_RS16175 (M1S46_16175) | - | 3341896..3342756 (-) | 861 | WP_071211542.1 | GPO family capsid scaffolding protein | - |
| M1S46_RS16180 (M1S46_16180) | - | 3342934..3344712 (+) | 1779 | WP_071211543.1 | terminase family protein | - |
| M1S46_RS16185 (M1S46_16185) | - | 3344709..3345758 (+) | 1050 | WP_062936692.1 | phage portal protein | - |
| M1S46_RS16190 (M1S46_16190) | - | 3345768..3345983 (+) | 216 | WP_071211544.1 | hypothetical protein | - |
| M1S46_RS16195 (M1S46_16195) | - | 3346100..3346279 (+) | 180 | WP_000009390.1 | type II toxin-antitoxin system HicA family toxin | - |
| M1S46_RS16200 (M1S46_16200) | - | 3346369..3346782 (+) | 414 | WP_000878688.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13331.01 Da Isoelectric Point: 10.1439
>NTDB_id=683788 M1S46_RS15975 WP_071211529.1 3310023..3310376(-) (ssb) [Acinetobacter baumannii strain 5664]
MRGVNKVILVGSLGADPITRQFPNGSSVTNFSIATSEKWQDKRTGDWIENTEWHRIVANNKLGEIAQKFLKKGSKVFIEG
SLRTRQWTDQNQNQFTVTEVRADHLQMLDSLPQANPY
MRGVNKVILVGSLGADPITRQFPNGSSVTNFSIATSEKWQDKRTGDWIENTEWHRIVANNKLGEIAQKFLKKGSKVFIEG
SLRTRQWTDQNQNQFTVTEVRADHLQMLDSLPQANPY
Nucleotide
Download Length: 354 bp
>NTDB_id=683788 M1S46_RS15975 WP_071211529.1 3310023..3310376(-) (ssb) [Acinetobacter baumannii strain 5664]
ATGCGTGGTGTAAATAAAGTCATTCTTGTAGGGAGTCTCGGAGCTGATCCTATTACAAGACAATTTCCGAATGGTTCTTC
AGTAACAAACTTTTCTATAGCTACTTCAGAAAAGTGGCAGGACAAACGTACTGGTGATTGGATAGAGAATACTGAGTGGC
ATCGAATTGTGGCTAACAACAAATTAGGAGAAATTGCTCAAAAATTTCTAAAAAAAGGTTCAAAAGTTTTCATCGAAGGC
TCTTTGCGTACACGTCAGTGGACTGATCAAAATCAAAATCAATTCACTGTGACAGAAGTAAGGGCAGATCACTTACAAAT
GCTGGATAGTCTTCCACAAGCAAACCCTTATTGA
ATGCGTGGTGTAAATAAAGTCATTCTTGTAGGGAGTCTCGGAGCTGATCCTATTACAAGACAATTTCCGAATGGTTCTTC
AGTAACAAACTTTTCTATAGCTACTTCAGAAAAGTGGCAGGACAAACGTACTGGTGATTGGATAGAGAATACTGAGTGGC
ATCGAATTGTGGCTAACAACAAATTAGGAGAAATTGCTCAAAAATTTCTAAAAAAAGGTTCAAAAGTTTTCATCGAAGGC
TCTTTGCGTACACGTCAGTGGACTGATCAAAATCAAAATCAATTCACTGTGACAGAAGTAAGGGCAGATCACTTACAAAT
GCTGGATAGTCTTCCACAAGCAAACCCTTATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56.364 |
94.017 |
0.53 |
| ssb | Vibrio cholerae strain A1552 |
55.556 |
84.615 |
0.47 |
| ssb | Neisseria meningitidis MC58 |
46.667 |
89.744 |
0.419 |
| ssb | Neisseria gonorrhoeae MS11 |
46.667 |
89.744 |
0.419 |