Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SNAG_RS01215 | Genome accession | NZ_AP017652 |
| Coordinates | 209282..210235 (+) | Length | 317 a.a. |
| NCBI ID | WP_096405925.1 | Uniprot ID | - |
| Organism | Streptococcus sp. NPS 308 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 204282..215235
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SNAG_RS01170 (SNAG_0236) | - | 204465..204830 (+) | 366 | WP_096405916.1 | DUF1033 family protein | - |
| SNAG_RS01175 (SNAG_0237) | comGA/cglA/cilD | 204893..205834 (+) | 942 | WP_096405917.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SNAG_RS01180 (SNAG_0238) | comGB/cglB | 205782..206798 (+) | 1017 | WP_096405919.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SNAG_RS01185 (SNAG_0239) | comGC/cglC | 206800..207123 (+) | 324 | WP_001037925.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SNAG_RS01190 (SNAG_0240) | comGD/cglD | 207086..207520 (+) | 435 | WP_172842371.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| SNAG_RS01195 (SNAG_0241) | comGE/cglE | 207483..207785 (+) | 303 | WP_172842372.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SNAG_RS01200 (SNAG_0242) | comGF/cglF | 207748..208209 (+) | 462 | WP_096405922.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SNAG_RS01205 (SNAG_0243) | comGG/cglG | 208187..208600 (+) | 414 | WP_096405924.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| SNAG_RS01210 (SNAG_0244) | - | 208633..209223 (+) | 591 | WP_172842373.1 | class I SAM-dependent methyltransferase | - |
| SNAG_RS01215 (SNAG_0245) | comYH | 209282..210235 (+) | 954 | WP_096405925.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SNAG_RS01220 (SNAG_0246) | - | 210285..211475 (+) | 1191 | WP_000167798.1 | acetate kinase | - |
| SNAG_RS01225 (SNAG_0247) | rnpA | 211635..212006 (+) | 372 | WP_000739254.1 | ribonuclease P protein component | - |
| SNAG_RS01230 (SNAG_0248) | - | 211981..212808 (+) | 828 | WP_172842374.1 | YidC/Oxa1 family membrane protein insertase | - |
| SNAG_RS01235 (SNAG_0249) | jag | 212823..213809 (+) | 987 | WP_096405929.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| SNAG_RS01240 (SNAG_0250) | - | 213865..214488 (+) | 624 | WP_096405930.1 | ribonuclease P | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35635.73 Da Isoelectric Point: 4.2742
>NTDB_id=68325 SNAG_RS01215 WP_096405925.1 209282..210235(+) (comYH) [Streptococcus sp. NPS 308]
MDFEKIEQAYTYLLENVQIIQSDLATNFYDALVEQNSIYLDGETELKQVKENNQALRRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLIVEELLHKEEISILEMGSGMGILGATFLTSLAKKVDYLGVEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFMAPSDLLTSPQ
SDLLKDWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKETEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
MDFEKIEQAYTYLLENVQIIQSDLATNFYDALVEQNSIYLDGETELKQVKENNQALRRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLIVEELLHKEEISILEMGSGMGILGATFLTSLAKKVDYLGVEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFMAPSDLLTSPQ
SDLLKDWLKDEVSLAAIIALPEDIFSTASQAKSIFVLQKKRDKETEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=68325 SNAG_RS01215 WP_096405925.1 209282..210235(+) (comYH) [Streptococcus sp. NPS 308]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAATCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTAGAGCAAAACAGCATTTATCTGGATGGCGAGACTGAGCTAAAGCAGGTCAAGGAGAACAATC
AAGCCCTTAGGCGCTTAGCACTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGGCAAACG
GAGCCTTTACAAGCCAATCACCAGTTTACACCGGATGCCATTGCCCTCCTCTTGGTACTTATTGTGGAAGAGTTGCTTCA
TAAAGAGGAAATTAGCATCCTCGAAATGGGTTCTGGCATGGGGATTCTGGGGGCTACCTTCTTGACTTCTCTTGCTAAAA
AAGTGGATTACTTGGGAGTCGAAGTGGATGATTTGCTAATTGATCTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAG
GCAGGTTTTGTTCAAGGTGATGCCGTTCGACCGCAAATGCTTAAAGAAAGCGATGTGGTCATCAGCGATTTGCCTGTCGG
CTATTACCCAGACGATGCCATCGCTTCACGCTATCAAGTGGCTTCTAGTCAAGAACATACCTATGCCCATCATTTGCTGA
TGGAACAAGGTCTTAAGTACCTCAAGTCAGATGGCTATGCTATTTTTATGGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGATTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCCTTACCAGAGGATATTTTTTCAAC
GGCCAGTCAGGCCAAGAGTATTTTTGTCTTACAAAAGAAAAGAGACAAGGAAACAGAACCTTTTGTCTATCCTCTAACAA
GTCTGCAAGATCCGTCAGTATTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAATCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTAGAGCAAAACAGCATTTATCTGGATGGCGAGACTGAGCTAAAGCAGGTCAAGGAGAACAATC
AAGCCCTTAGGCGCTTAGCACTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGGCAAACG
GAGCCTTTACAAGCCAATCACCAGTTTACACCGGATGCCATTGCCCTCCTCTTGGTACTTATTGTGGAAGAGTTGCTTCA
TAAAGAGGAAATTAGCATCCTCGAAATGGGTTCTGGCATGGGGATTCTGGGGGCTACCTTCTTGACTTCTCTTGCTAAAA
AAGTGGATTACTTGGGAGTCGAAGTGGATGATTTGCTAATTGATCTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAG
GCAGGTTTTGTTCAAGGTGATGCCGTTCGACCGCAAATGCTTAAAGAAAGCGATGTGGTCATCAGCGATTTGCCTGTCGG
CTATTACCCAGACGATGCCATCGCTTCACGCTATCAAGTGGCTTCTAGTCAAGAACATACCTATGCCCATCATTTGCTGA
TGGAACAAGGTCTTAAGTACCTCAAGTCAGATGGCTATGCTATTTTTATGGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGATTGGCTCAAAGACGAAGTGAGTCTGGCTGCTATCATCGCCTTACCAGAGGATATTTTTTCAAC
GGCCAGTCAGGCCAAGAGTATTTTTGTCTTACAAAAGAAAAGAGACAAGGAAACAGAACCTTTTGTCTATCCTCTAACAA
GTCTGCAAGATCCGTCAGTATTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
57.878 |
98.107 |
0.568 |
| comYH | Streptococcus mutans UA159 |
57.556 |
98.107 |
0.565 |