Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   OKW88_RS07730 Genome accession   NZ_CP110105
Coordinates   1501586..1502281 (-) Length   231 a.a.
NCBI ID   WP_407568080.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496586..1507281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS07705 (OKW88_07695) minD 1497522..1498328 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  OKW88_RS07710 (OKW88_07700) minC 1498330..1499010 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  OKW88_RS07715 (OKW88_07705) mreD 1499063..1499581 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  OKW88_RS07720 (OKW88_07710) mreC 1499578..1500450 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  OKW88_RS07725 (OKW88_07715) mreB 1500481..1501494 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  OKW88_RS07730 (OKW88_07720) ysxA/radC 1501586..1502281 (-) 696 WP_407568080.1 DNA repair protein RadC Machinery gene
  OKW88_RS07735 (OKW88_07725) maf 1502318..1502887 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  OKW88_RS07740 (OKW88_07730) spoIIB 1503040..1504038 (-) 999 WP_342006707.1 stage II sporulation protein SpoIIB -
  OKW88_RS07745 (OKW88_07735) comC 1504172..1504918 (-) 747 WP_407568081.1 prepilin peptidase Machinery gene
  OKW88_RS07750 (OKW88_07740) folC 1505057..1506349 (-) 1293 WP_407568082.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26075.36 Da        Isoelectric Point: 7.5703

>NTDB_id=683069 OKW88_RS07730 WP_407568080.1 1501586..1502281(-) (ysxA/radC) [Bacillus subtilis strain CF03]
MVIHDLPLKLKDFPMREKPREGLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=683069 OKW88_RS07730 WP_407568080.1 1501586..1502281(-) (ysxA/radC) [Bacillus subtilis strain CF03]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAGAGAAAAGCCAAGAGAAGGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGACTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACACCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

47.619

90.909

0.433
  radC Streptococcus pneumoniae R6

47.143

90.909

0.429
  radC Streptococcus pneumoniae D39

47.143

90.909

0.429
  radC Streptococcus gordonii str. Challis substr. CH1

46.19

90.909

0.42