Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | HPATCC43504_RS01160 | Genome accession | NZ_AP017632 |
| Coordinates | 246690..247826 (+) | Length | 378 a.a. |
| NCBI ID | WP_108169558.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ATCC 43504 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 241690..252826
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPATCC43504_RS01125 (HPATCC43504_00227) | panD | 242138..242491 (+) | 354 | WP_000142226.1 | aspartate 1-decarboxylase | - |
| HPATCC43504_RS01130 (HPATCC43504_00228) | - | 242494..242796 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPATCC43504_RS01135 (HPATCC43504_00229) | - | 242796..243791 (+) | 996 | WP_108169555.1 | PDZ domain-containing protein | - |
| HPATCC43504_RS01140 (HPATCC43504_00230) | comB6 | 243799..244854 (+) | 1056 | WP_108169556.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPATCC43504_RS01145 (HPATCC43504_00231) | comB7 | 244870..244983 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPATCC43504_RS01150 (HPATCC43504_00232) | comB8 | 244980..245717 (+) | 738 | WP_000660523.1 | virB8 family protein | Machinery gene |
| HPATCC43504_RS01155 (HPATCC43504_00233) | comB9 | 245717..246697 (+) | 981 | WP_108169557.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPATCC43504_RS01160 (HPATCC43504_00234) | comB10 | 246690..247826 (+) | 1137 | WP_108169558.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPATCC43504_RS01165 (HPATCC43504_00235) | - | 247897..249309 (+) | 1413 | WP_108169559.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPATCC43504_RS01170 (HPATCC43504_00236) | gmd | 249351..250496 (+) | 1146 | WP_111735917.1 | GDP-mannose 4,6-dehydratase | - |
| HPATCC43504_RS01175 (HPATCC43504_00237) | - | 250489..251421 (+) | 933 | WP_108169561.1 | GDP-L-fucose synthase | - |
| HPATCC43504_RS01180 (HPATCC43504_00238) | - | 251772..252230 (-) | 459 | WP_331837352.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42248.81 Da Isoelectric Point: 9.9312
>NTDB_id=68275 HPATCC43504_RS01160 WP_108169558.1 246690..247826(+) (comB10) [Helicobacter pylori strain ATCC 43504]
MNKWLKGVIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKSPPMDLKTNTTPLKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGVIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKSPPMDLKTNTTPLKKDFSSKQWDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=68275 HPATCC43504_RS01160 WP_108169558.1 246690..247826(+) (comB10) [Helicobacter pylori strain ATCC 43504]
ATGAATAAGTGGCTTAAGGGGGTGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCTAAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGTGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATGGATTTAAAAAC
AAACACAACCCCCCTAAAAAAAGACTTTTCTTCAAAGCAATGGGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.09 |
100 |
0.971 |