Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | HPATCC43504_RS01140 | Genome accession | NZ_AP017632 |
| Coordinates | 243799..244854 (+) | Length | 351 a.a. |
| NCBI ID | WP_108169556.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain ATCC 43504 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 238799..249854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPATCC43504_RS01110 (HPATCC43504_00224) | - | 239220..239633 (+) | 414 | WP_033587787.1 | universal stress protein | - |
| HPATCC43504_RS01115 (HPATCC43504_00225) | - | 239648..239923 (+) | 276 | WP_000784903.1 | ATP-dependent Clp protease adaptor ClpS | - |
| HPATCC43504_RS01120 (HPATCC43504_00226) | - | 239923..242148 (+) | 2226 | WP_108169554.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| HPATCC43504_RS01125 (HPATCC43504_00227) | panD | 242138..242491 (+) | 354 | WP_000142226.1 | aspartate 1-decarboxylase | - |
| HPATCC43504_RS01130 (HPATCC43504_00228) | - | 242494..242796 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPATCC43504_RS01135 (HPATCC43504_00229) | - | 242796..243791 (+) | 996 | WP_108169555.1 | PDZ domain-containing protein | - |
| HPATCC43504_RS01140 (HPATCC43504_00230) | comB6 | 243799..244854 (+) | 1056 | WP_108169556.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPATCC43504_RS01145 (HPATCC43504_00231) | comB7 | 244870..244983 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPATCC43504_RS01150 (HPATCC43504_00232) | comB8 | 244980..245717 (+) | 738 | WP_000660523.1 | virB8 family protein | Machinery gene |
| HPATCC43504_RS01155 (HPATCC43504_00233) | comB9 | 245717..246697 (+) | 981 | WP_108169557.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPATCC43504_RS01160 (HPATCC43504_00234) | comB10 | 246690..247826 (+) | 1137 | WP_108169558.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPATCC43504_RS01165 (HPATCC43504_00235) | - | 247897..249309 (+) | 1413 | WP_108169559.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39799.83 Da Isoelectric Point: 9.0413
>NTDB_id=68271 HPATCC43504_RS01140 WP_108169556.1 243799..244854(+) (comB6) [Helicobacter pylori strain ATCC 43504]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFVLFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNAFNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFVLFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVICLKKCFALGFYKPLLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNAFNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=68271 HPATCC43504_RS01140 WP_108169556.1 243799..244854(+) (comB6) [Helicobacter pylori strain ATCC 43504]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGTGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTTTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGTGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTCTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGATTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTTTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACT
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.296 |
100 |
0.963 |