Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M1S48_RS02700 Genome accession   NZ_CP096698
Coordinates   548479..548832 (-) Length   117 a.a.
NCBI ID   WP_001214081.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 5769     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 543479..553832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S48_RS02670 (M1S48_02670) queA 544630..545667 (-) 1038 WP_001177145.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  M1S48_RS02680 (M1S48_02680) - 546114..547181 (+) 1068 WP_000107856.1 site-specific integrase -
  M1S48_RS02685 (M1S48_02685) - 547209..547505 (-) 297 WP_000218943.1 hypothetical protein -
  M1S48_RS02690 (M1S48_02690) - 547502..547723 (-) 222 WP_000424583.1 hypothetical protein -
  M1S48_RS02695 (M1S48_02695) - 547732..548469 (-) 738 WP_000125746.1 3'-5' exonuclease -
  M1S48_RS02700 (M1S48_02700) ssb 548479..548832 (-) 354 WP_001214081.1 single-stranded DNA-binding protein Machinery gene
  M1S48_RS02705 (M1S48_02705) - 548820..549137 (-) 318 WP_000049862.1 hypothetical protein -
  M1S48_RS02710 (M1S48_02710) - 549141..549659 (-) 519 WP_000877796.1 hypothetical protein -
  M1S48_RS02715 (M1S48_02715) - 549662..550093 (-) 432 WP_001178667.1 DUF2528 family protein -
  M1S48_RS02720 (M1S48_02720) - 550161..550496 (-) 336 WP_000841657.1 hypothetical protein -
  M1S48_RS02725 (M1S48_02725) - 550493..553231 (-) 2739 WP_025464780.1 toprim domain-containing protein -
  M1S48_RS02730 (M1S48_02730) - 553325..553516 (-) 192 WP_001043481.1 hypothetical protein -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 13319.05 Da        Isoelectric Point: 9.7939

>NTDB_id=682685 M1S48_RS02700 WP_001214081.1 548479..548832(-) (ssb) [Acinetobacter baumannii strain 5769]
MRGINKVILVGVLGANPIPKQFQNGGSYAQFSIATSEKYQDKRTGDWIENTEWHRIVAHNRLGEIACQFLKKGSKVYIEG
SLHTRKWTDQNNQDRYVTEVRAITFQSLDSLPQANPV

Nucleotide


Download         Length: 354 bp        

>NTDB_id=682685 M1S48_RS02700 WP_001214081.1 548479..548832(-) (ssb) [Acinetobacter baumannii strain 5769]
ATGCGCGGAATAAACAAAGTGATATTGGTCGGTGTGCTTGGTGCCAATCCAATTCCTAAACAGTTTCAAAACGGTGGCTC
CTATGCTCAGTTTTCAATTGCCACTTCAGAAAAATACCAGGACAAACGAACTGGTGACTGGATTGAAAATACAGAGTGGC
ATCGTATTGTTGCCCACAACAGACTAGGAGAAATTGCCTGCCAATTTCTTAAAAAAGGTTCAAAAGTTTATATCGAAGGG
TCATTACATACACGGAAATGGACTGACCAAAACAATCAAGACCGTTACGTAACTGAAGTTAGAGCCATTACTTTTCAATC
GCTCGATAGCTTGCCACAAGCAAACCCGGTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.364

94.017

0.53
  ssb Vibrio cholerae strain A1552

55.556

84.615

0.47
  ssb Neisseria gonorrhoeae MS11

41.905

89.744

0.376
  ssb Neisseria meningitidis MC58

41.905

89.744

0.376