Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M0C34_RS02605 Genome accession   NZ_CP096670
Coordinates   555538..556161 (+) Length   207 a.a.
NCBI ID   WP_248714100.1    Uniprot ID   -
Organism   Agarivorans sp. TSD2052     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 550538..561161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0C34_RS02595 (M0C34_02595) uvrA 551117..553948 (-) 2832 WP_248714099.1 excinuclease ABC subunit UvrA -
  M0C34_RS02600 (M0C34_02600) - 554115..555485 (+) 1371 WP_248715582.1 MFS transporter -
  M0C34_RS02605 (M0C34_02605) ssb 555538..556161 (+) 624 WP_248714100.1 single-stranded DNA-binding protein Machinery gene
  M0C34_RS02610 (M0C34_02610) - 556244..556999 (-) 756 WP_248714101.1 serine protease -
  M0C34_RS02615 (M0C34_02615) - 557119..557979 (+) 861 WP_248714102.1 ThiF family adenylyltransferase -
  M0C34_RS02620 (M0C34_02620) - 558161..559117 (+) 957 WP_248714103.1 THxN family PEP-CTERM protein -
  M0C34_RS02625 (M0C34_02625) - 559274..560230 (+) 957 WP_248714104.1 PEP-CTERM/exosortase system-associated acyltransferase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22231.57 Da        Isoelectric Point: 5.2358

>NTDB_id=682211 M0C34_RS02605 WP_248714100.1 555538..556161(+) (ssb) [Agarivorans sp. TSD2052]
MATRGINKVILVGNLGQDPEVRFMPNGGAVANITIATSESWRDKQSGEQKERTEWHRVVLFGKLAEVAGEYLKKGSQVYI
EGQLQTRKWQDQSGQDRFSTEVVVQGFNGVMQMLGGRPGGGASQQQGNWGGQQAAAPSAPAQQGGFQQQAAPQQQGGFQQ
APQQAAPQQGGYQQQAKPAAAPQQAPAPQAAPQFNEPPMDFDDDIPF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=682211 M0C34_RS02605 WP_248714100.1 555538..556161(+) (ssb) [Agarivorans sp. TSD2052]
ATGGCCACTCGGGGCATTAATAAAGTAATTTTGGTTGGAAATTTAGGACAGGATCCTGAAGTCCGTTTTATGCCAAACGG
AGGGGCCGTCGCCAACATTACCATTGCTACTTCAGAAAGTTGGAGAGATAAGCAAAGCGGCGAACAAAAAGAGCGGACAG
AATGGCACCGTGTGGTGTTGTTCGGCAAATTGGCTGAAGTGGCTGGTGAATACCTTAAAAAGGGTTCTCAGGTATATATT
GAAGGTCAATTACAAACACGTAAGTGGCAAGATCAAAGTGGTCAAGACCGTTTCTCTACGGAAGTGGTTGTGCAGGGCTT
TAATGGTGTTATGCAAATGTTGGGTGGTCGTCCTGGTGGCGGTGCATCACAGCAACAAGGTAATTGGGGTGGGCAACAAG
CTGCTGCTCCTAGTGCGCCGGCGCAACAAGGTGGCTTCCAGCAACAGGCTGCGCCACAACAGCAAGGTGGCTTCCAGCAA
GCACCGCAACAGGCGGCTCCCCAGCAAGGTGGCTATCAGCAACAAGCTAAGCCTGCTGCTGCACCTCAGCAAGCGCCAGC
ACCACAAGCAGCTCCTCAGTTTAATGAGCCGCCAATGGATTTTGATGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.667

100

0.667
  ssb Glaesserella parasuis strain SC1401

52.195

99.034

0.517
  ssb Neisseria gonorrhoeae MS11

45.588

98.551

0.449
  ssb Neisseria meningitidis MC58

45.098

98.551

0.444