Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PALA42_RS28475 Genome accession   NZ_CP109931
Coordinates   6112987..6113484 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain PALA42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6107987..6118484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA42_RS28455 (PALA42_05638) pchD 6108771..6110414 (+) 1644 WP_003118945.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  PALA42_RS28460 (PALA42_05639) pchC 6110411..6111166 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  PALA42_RS28465 (PALA42_05640) pchB 6111166..6111471 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  PALA42_RS28470 (PALA42_05641) pchA 6111468..6112898 (+) 1431 WP_003118152.1 isochorismate synthase PchA -
  PALA42_RS28475 (PALA42_05642) ssb 6112987..6113484 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PALA42_RS28480 (PALA42_05643) - 6113501..6114889 (-) 1389 WP_003103910.1 MFS transporter -
  PALA42_RS28485 (PALA42_05644) uvrA 6115103..6117940 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  PALA42_RS28490 (PALA42_05645) bfr 6118011..6118475 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=682021 PALA42_RS28475 WP_003114685.1 6112987..6113484(-) (ssb) [Pseudomonas aeruginosa strain PALA42]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=682021 PALA42_RS28475 WP_003114685.1 6112987..6113484(-) (ssb) [Pseudomonas aeruginosa strain PALA42]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515