Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M0696_RS20910 Genome accession   NZ_CP096590
Coordinates   4129717..4130235 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus rugosus strain A78.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4124717..4135235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS20880 (M0696_20880) - 4125228..4126583 (+) 1356 WP_166846137.1 MFS transporter -
  M0696_RS20885 (M0696_20885) - 4126618..4127166 (-) 549 WP_222142434.1 sugar O-acetyltransferase -
  M0696_RS20890 (M0696_20890) - 4127184..4127564 (-) 381 WP_166846131.1 VOC family protein -
  M0696_RS20895 (M0696_20895) ccpB 4127620..4128555 (-) 936 WP_222142435.1 transcriptional regulator CcpB -
  M0696_RS20900 (M0696_20900) xth 4128615..4129373 (-) 759 WP_166846125.1 exodeoxyribonuclease III -
  M0696_RS20905 (M0696_20905) rpsR 4129434..4129673 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  M0696_RS20910 (M0696_20910) ssbA 4129717..4130235 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  M0696_RS20915 (M0696_20915) rpsF 4130276..4130563 (-) 288 WP_014115888.1 30S ribosomal protein S6 -
  M0696_RS20920 (M0696_20920) ychF 4130674..4131774 (-) 1101 WP_166846122.1 redox-regulated ATPase YchF -
  M0696_RS20925 (M0696_20925) - 4131901..4133904 (-) 2004 WP_222142436.1 molybdopterin-dependent oxidoreductase -
  M0696_RS20930 (M0696_20930) - 4133954..4134160 (-) 207 WP_166846114.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=681993 M0696_RS20910 WP_003219228.1 4129717..4130235(-) (ssbA) [Bacillus rugosus strain A78.1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=681993 M0696_RS20910 WP_003219228.1 4129717..4130235(-) (ssbA) [Bacillus rugosus strain A78.1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378