Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M1F47_RS01830 Genome accession   NZ_CP096535
Coordinates   407170..407673 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain RIVM_M047916     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 402170..412673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F47_RS01800 (M1F47_01795) - 403110..403955 (+) 846 WP_001825659.1 ParB/RepB/Spo0J family partition protein -
  M1F47_RS01805 (M1F47_01800) - 404109..404990 (+) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  M1F47_RS01810 (M1F47_01805) - 405020..405223 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  M1F47_RS01815 (M1F47_01810) ychF 405235..406332 (+) 1098 WP_001218731.1 redox-regulated ATPase YchF -
  M1F47_RS01820 (M1F47_01815) - 406418..406609 (-) 192 WP_001052481.1 hypothetical protein -
  M1F47_RS01825 (M1F47_01820) rpsF 406853..407149 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  M1F47_RS01830 (M1F47_01825) ssbA 407170..407673 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  M1F47_RS01835 (M1F47_01830) rpsR 407725..407967 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  M1F47_RS01840 (M1F47_01835) - 408424..408644 (-) 221 Protein_365 site-specific integrase -
  M1F47_RS01845 (M1F47_01840) - 408779..409093 (+) 315 Protein_366 toxin -
  M1F47_RS01850 (M1F47_01845) - 409459..409827 (+) 369 WP_000849160.1 YxeA family protein -
  M1F47_RS01855 (M1F47_01850) - 410007..410579 (+) 573 WP_000769718.1 PepSY domain-containing protein -
  M1F47_RS01860 (M1F47_01855) - 410717..410980 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  M1F47_RS01865 (M1F47_01860) - 411274..411525 (+) 252 WP_000466741.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  M1F47_RS01870 (M1F47_01865) - 411567..411775 (-) 209 Protein_371 hypothetical protein -
  M1F47_RS01875 (M1F47_01870) - 411953..412534 (+) 582 WP_000158385.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=681631 M1F47_RS01830 WP_000934799.1 407170..407673(+) (ssbA) [Staphylococcus aureus strain RIVM_M047916]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=681631 M1F47_RS01830 WP_000934799.1 407170..407673(+) (ssbA) [Staphylococcus aureus strain RIVM_M047916]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365