Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   M1F14_RS21035 Genome accession   NZ_CP096369
Coordinates   4598131..4598805 (+) Length   224 a.a.
NCBI ID   WP_048608563.1    Uniprot ID   A0A0M0HVE7
Organism   Providencia sp. PROV003     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4596809..4598089 4598131..4598805 flank 42


Gene organization within MGE regions


Location: 4596809..4598805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F14_RS21035 ideA 4598131..4598805 (+) 675 WP_048608563.1 endonuclease Regulator

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26077.09 Da        Isoelectric Point: 7.2404

>NTDB_id=681369 M1F14_RS21035 WP_048608563.1 4598131..4598805(+) (ideA) [Providencia sp. PROV003]
MKSVYPFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYSNDGAIDAASCGYEPRKQPKRGERLEWEHVVS
AWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDFEVDFKDRRAEPPA
NRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKVRDFKIKTIQGNSNCHVSNSC

Nucleotide


Download         Length: 675 bp        

>NTDB_id=681369 M1F14_RS21035 WP_048608563.1 4598131..4598805(+) (ideA) [Providencia sp. PROV003]
ATTAAATCCGTATACCCTTTCTTTATAGCGTTATTCGCTATACCTGCAATTGCAGAACACCCCACATCGTTCAGTCAGGC
AAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAGCAATGATGGTGCGA
TTGATGCTGCATCTTGCGGATATGAACCAAGAAAGCAACCGAAACGAGGTGAACGCTTAGAGTGGGAACATGTAGTCTCA
GCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGCGAAAAGAATGATCCTGAGTTTTC
TAAAATGGTTTCGGATCTCCATAACCTCGTACCATCTGTAGGAGAGCTCAATGGGGATAGGTCAAATTTTCGATTTGGCA
TGATTCCGAATGAACCAAGATCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGTCGAGCAGAACCACCAGCT
AACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTCAGTAGGCAACAAACTCA
GCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAGTGCGTGATTTTAAGATTAAAACTATTCAAG
GTAACTCTAACTGCCATGTGTCAAATAGCTGTTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(50-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M0HVE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

92.76

98.661

0.915
  dns Vibrio parahaemolyticus RIMD 2210633

52.381

100

0.54
  dns Aliivibrio fischeri ES114

52.423

100

0.531
  dns Vibrio cholerae strain A1552

50.661

100

0.513
  dns Campylobacter jejuni RM1221

37.674

95.982

0.362