Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M1F14_RS00565 Genome accession   NZ_CP096369
Coordinates   123914..124438 (-) Length   174 a.a.
NCBI ID   WP_042848855.1    Uniprot ID   A0AA97CN96
Organism   Providencia sp. PROV003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 118914..129438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F14_RS00540 ilvN 119328..119612 (-) 285 WP_042848850.1 acetolactate synthase small subunit -
  M1F14_RS00545 ilvB 119615..121312 (-) 1698 WP_042848851.1 acetolactate synthase large subunit -
  M1F14_RS00550 ivbL 121416..121505 (-) 90 WP_105880933.1 ilvB operon leader peptide IvbL -
  M1F14_RS00555 - 121852..123024 (+) 1173 WP_042848852.1 MFS transporter -
  M1F14_RS00560 - 123261..123668 (+) 408 WP_042848854.1 helix-turn-helix domain-containing protein -
  M1F14_RS00565 ssb 123914..124438 (-) 525 WP_042848855.1 single-stranded DNA-binding protein Machinery gene
  M1F14_RS00570 uvrA 124899..127733 (+) 2835 WP_042848856.1 excinuclease ABC subunit UvrA -
  M1F14_RS00575 - 127948..128193 (+) 246 WP_181469065.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18726.71 Da        Isoelectric Point: 4.9468

>NTDB_id=681351 M1F14_RS00565 WP_042848855.1 123914..124438(-) (ssb) [Providencia sp. PROV003]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDSSSQGQGGQGGWGQPQQPQAQAAQQFSGGGAPARSQAPAPQ
TNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=681351 M1F14_RS00565 WP_042848855.1 123914..124438(-) (ssb) [Providencia sp. PROV003]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
TGGGGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGCGATAAGCAAACCGGCGAGATGCGTGAAAAAACAG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCTGAGGTTGCGGGTGAATATTTAAAAAAAGGTTCACAAGTCTACATC
GAAGGTTCTTTGCAAACCCGTAAATGGCAAGATCAAAGCGGTCAAGACCGTTACACCACTGAAGTTGTTGTTAATATCGG
TGGTTCAATGCAAATGCTAGGTGGTCGTGGTGGTGATTCGTCATCACAAGGGCAAGGCGGTCAGGGGGGTTGGGGTCAGC
CTCAGCAGCCACAAGCTCAAGCTGCTCAACAATTTAGTGGCGGTGGTGCGCCAGCTCGTTCACAAGCACCAGCACCACAA
ACTAATGAGCCACCAATGGATTTCGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.271

100

0.741
  ssb Glaesserella parasuis strain SC1401

58.065

100

0.621
  ssb Neisseria meningitidis MC58

48.315

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.494