Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M1F03_RS02545 Genome accession   NZ_CP096346
Coordinates   595190..595708 (+) Length   172 a.a.
NCBI ID   WP_154623819.1    Uniprot ID   -
Organism   Providencia sp. PROV080     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 595190..605446 595190..595708 within 0


Gene organization within MGE regions


Location: 595190..605446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F03_RS02545 ssb 595190..595708 (+) 519 WP_154623819.1 single-stranded DNA-binding protein Machinery gene
  M1F03_RS02550 - 595927..597108 (+) 1182 WP_154598816.1 tyrosine-type recombinase/integrase -
  M1F03_RS02555 - 597105..598688 (+) 1584 WP_251465021.1 tyrosine-type recombinase/integrase -
  M1F03_RS02560 - 598681..600690 (+) 2010 WP_154623818.1 integrase -
  M1F03_RS02565 - 600683..601159 (+) 477 WP_154598814.1 protein kinase -
  M1F03_RS02570 - 601249..601488 (+) 240 WP_154598813.1 transcription factor -
  M1F03_RS02575 hsdR 601529..603922 (+) 2394 WP_154623817.1 EcoAI/FtnUII family type I restriction enzme subunit R -
  M1F03_RS02580 - 603980..605446 (+) 1467 WP_154598811.1 type I restriction-modification system subunit M -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18410.37 Da        Isoelectric Point: 4.9567

>NTDB_id=681228 M1F03_RS02545 WP_154623819.1 595190..595708(+) (ssb) [Providencia sp. PROV080]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGESSGQSQGGQGGWGQPQQPAAQQFSGGGAPARAPSSPAPQSS
EPPIDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=681228 M1F03_RS02545 WP_154623819.1 595190..595708(+) (ssb) [Providencia sp. PROV080]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACTTAGGGCAAGATCCTGAAATCCGTTACATGCCTAATGG
CGGTGCCGTGGCAAACCTGACTCTGGCAACTTCTGAAAGCTGGCGTGATAAGCAAACCGGCGAAATGCGTGAGAAAACAG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCTGAAGTTGCGGGTGAATATCTGAAAAAAGGTTCTCAGGTATACATC
GAAGGTTCTTTGCAAACGCGTAAATGGCAGGACCAAAGTGGTCAAGATCGTTATACCACAGAAGTCGTGGTTAACATTGG
CGGGTCAATGCAAATGCTAGGCGGACGCGGCGGTGAATCTTCAGGCCAAAGCCAAGGTGGCCAAGGTGGTTGGGGGCAAC
CACAGCAACCAGCAGCGCAACAATTTAGTGGTGGTGGCGCACCAGCGCGTGCACCGTCATCGCCAGCTCCACAAAGCAGT
GAGCCACCAATTGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.111

100

0.744
  ssb Glaesserella parasuis strain SC1401

55.435

100

0.593
  ssb Neisseria meningitidis MC58

47.191

100

0.488
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.488