Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M1F20_RS02165 Genome accession   NZ_CP096282
Coordinates   490921..491442 (+) Length   173 a.a.
NCBI ID   WP_096864666.1    Uniprot ID   -
Organism   Providencia sp. PROV280     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 485921..496442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F20_RS02155 - 486144..487340 (+) 1197 WP_036958319.1 aromatic amino acid transaminase -
  M1F20_RS02160 uvrA 487421..490255 (-) 2835 WP_112307708.1 excinuclease ABC subunit UvrA -
  M1F20_RS02165 ssb 490921..491442 (+) 522 WP_096864666.1 single-stranded DNA-binding protein Machinery gene
  M1F20_RS02170 - 491727..492134 (-) 408 WP_004260890.1 helix-turn-helix domain-containing protein -
  M1F20_RS02175 - 492377..493549 (-) 1173 WP_004260887.1 MFS transporter -
  M1F20_RS02180 ivbL 493882..493971 (+) 90 WP_099975407.1 ilvB operon leader peptide IvbL -
  M1F20_RS02185 ilvB 494075..495772 (+) 1698 WP_094961401.1 acetolactate synthase large subunit -
  M1F20_RS02190 ilvN 495775..496059 (+) 285 WP_004260877.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18551.56 Da        Isoelectric Point: 4.9468

>NTDB_id=680882 M1F20_RS02165 WP_096864666.1 490921..491442(+) (ssb) [Providencia sp. PROV280]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=680882 M1F20_RS02165 WP_096864666.1 490921..491442(+) (ssb) [Providencia sp. PROV280]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCGGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATA
GAAGGTTCTTTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGACCGTTACACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCACCATCACAAGGTCAAGGCGGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCTCAAGCAGCACAACAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCACCTGCTCCACAAACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.222

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.15

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.486
  ssb Neisseria meningitidis MC58

46.927

100

0.486