Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M0M83_RS02665 Genome accession   NZ_CP096258
Coordinates   630663..631184 (+) Length   173 a.a.
NCBI ID   WP_125892829.1    Uniprot ID   -
Organism   Providencia rettgeri strain Pre20-95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 625663..636184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M83_RS02655 (M0M83_02655) - 625865..627046 (-) 1182 WP_213913990.1 hypothetical protein -
  M0M83_RS02660 (M0M83_02660) uvrA 627380..630214 (-) 2835 WP_213913988.1 excinuclease ABC subunit UvrA -
  M0M83_RS02665 (M0M83_02665) ssb 630663..631184 (+) 522 WP_125892829.1 single-stranded DNA-binding protein Machinery gene
  M0M83_RS02670 (M0M83_02670) - 631470..631877 (-) 408 WP_102139104.1 helix-turn-helix domain-containing protein -
  M0M83_RS02675 (M0M83_02675) ivbL 632723..632818 (+) 96 WP_125892818.1 ilvB operon leader peptide IvbL -
  M0M83_RS02680 (M0M83_02680) ilvB 632922..634619 (+) 1698 WP_248468411.1 acetolactate synthase large subunit -
  M0M83_RS02685 (M0M83_02685) ilvN 634622..634906 (+) 285 WP_125892816.1 acetolactate synthase small subunit -
  M0M83_RS02690 (M0M83_02690) - 635101..635763 (+) 663 WP_213913986.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18541.52 Da        Isoelectric Point: 4.9468

>NTDB_id=680702 M0M83_RS02665 WP_125892829.1 630663..631184(+) (ssb) [Providencia rettgeri strain Pre20-95]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDASSQGQGGQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=680702 M0M83_RS02665 WP_125892829.1 630663..631184(+) (ssb) [Providencia rettgeri strain Pre20-95]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTTGGCAAACTTGCTGAAGTCGCTGGTGAATACCTGAAGAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTATACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGTTAGGTGGCCGTGGTGGTGATGCATCTTCACAAGGTCAGGGTGGCCAAGGTGGTTGGGGTCAAC
CTCAGCAGCCACAAGCAGCACAGCAATTTAGTGGCGGCGGAGCCCCTGCAGCACGTTCATCAGCGCCTGCTCCACAAACC
AATGAACCACCAATGGACTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

47.458

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.486