Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PALA34_RS12345 Genome accession   NZ_CP109849
Coordinates   2578488..2578985 (-) Length   165 a.a.
NCBI ID   WP_023082361.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA34     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2573488..2583985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA34_RS12320 (PALA34_02444) - 2573738..2575639 (-) 1902 WP_023082357.1 DNA cytosine methyltransferase -
  PALA34_RS12325 - 2575755..2576081 (+) 327 WP_124117754.1 hypothetical protein -
  PALA34_RS12330 (PALA34_02445) dinR/lexA 2576247..2576435 (-) 189 WP_073662603.1 LexA family protein Regulator
  PALA34_RS12335 (PALA34_02446) yejK 2576453..2577508 (-) 1056 WP_023082359.1 nucleoid-associated protein YejK -
  PALA34_RS12340 (PALA34_02447) - 2577535..2578461 (-) 927 WP_023082360.1 recombination-associated protein RdgC -
  PALA34_RS12345 (PALA34_02448) ssb 2578488..2578985 (-) 498 WP_023082361.1 single-stranded DNA-binding protein Machinery gene
  PALA34_RS12350 (PALA34_02449) - 2578989..2579594 (-) 606 WP_004349164.1 3'-5' exonuclease -
  PALA34_RS12355 (PALA34_02450) - 2579716..2581353 (-) 1638 WP_023082362.1 YqaJ viral recombinase family protein -
  PALA34_RS12360 (PALA34_02451) - 2581350..2582048 (-) 699 WP_023082363.1 ERF family protein -
  PALA34_RS12365 (PALA34_02452) - 2582069..2582206 (-) 138 WP_004354975.1 hypothetical protein -
  PALA34_RS12370 (PALA34_02454) - 2582319..2582690 (-) 372 WP_004354971.1 hypothetical protein -
  PALA34_RS12375 (PALA34_02455) - 2582687..2582908 (-) 222 WP_023082364.1 hypothetical protein -
  PALA34_RS12380 (PALA34_02456) - 2582892..2583044 (-) 153 WP_023082365.1 hypothetical protein -
  PALA34_RS12385 (PALA34_02457) - 2583211..2583474 (-) 264 WP_023082366.1 hypothetical protein -
  PALA34_RS12390 (PALA34_02458) - 2583478..2583690 (-) 213 WP_023082367.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18545.59 Da        Isoelectric Point: 8.4405

>NTDB_id=680613 PALA34_RS12345 WP_023082361.1 2578488..2578985(-) (ssb) [Pseudomonas aeruginosa strain PALA34]
MARGVNKVILVGHLGQDPDARSTPGGKAVTSLSLATSESWKDKQTGQQQERTEWHRVVLFGRLAEIAAQYLRKGSQVYIE
GSLRTRKWQGQDGQDHYSTEVVVDINGNMQLLGGKPEQAGQSRGPGREPPPRPTTHHQPQPATDYESYDDDIPFDNPYRR
LWRIV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=680613 PALA34_RS12345 WP_023082361.1 2578488..2578985(-) (ssb) [Pseudomonas aeruginosa strain PALA34]
ATGGCACGCGGAGTGAACAAGGTAATCCTGGTCGGCCATCTGGGCCAGGATCCAGACGCAAGATCTACCCCGGGCGGAAA
GGCGGTCACCTCCCTCAGTCTGGCCACTAGCGAAAGCTGGAAAGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAGT
GGCACCGGGTCGTGCTCTTTGGCCGGCTGGCCGAAATCGCAGCGCAATACCTGCGAAAGGGCTCCCAGGTCTACATCGAA
GGCAGCCTACGCACCCGCAAGTGGCAGGGCCAGGACGGCCAGGACCACTACAGCACCGAGGTAGTGGTGGACATCAACGG
CAACATGCAACTGCTCGGCGGCAAGCCTGAGCAGGCAGGCCAGTCGCGTGGCCCTGGCCGCGAGCCGCCACCGCGGCCGA
CCACTCACCACCAGCCGCAACCGGCAACCGACTACGAAAGCTACGACGACGACATCCCCTTCGATAACCCCTACCGCAGG
CTCTGGCGCATCGTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.714

100

0.57
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.515
  ssb Neisseria meningitidis MC58

42.045

100

0.448
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.448