Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MZK46_RS18770 Genome accession   NZ_CP096209
Coordinates   3578135..3578632 (-) Length   165 a.a.
NCBI ID   WP_038562622.1    Uniprot ID   -
Organism   Terribacillus saccharophilus strain ZY-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3573135..3583632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZK46_RS18750 - 3573837..3574994 (-) 1158 WP_318539934.1 alanine--glyoxylate aminotransferase family protein -
  MZK46_RS18755 - 3575477..3576196 (+) 720 WP_318539935.1 NAD-dependent protein deacylase -
  MZK46_RS18760 - 3576225..3577655 (-) 1431 WP_318539936.1 DHA2 family efflux MFS transporter permease subunit -
  MZK46_RS18765 rpsR 3577884..3578114 (-) 231 WP_318539937.1 30S ribosomal protein S18 -
  MZK46_RS18770 ssbA 3578135..3578632 (-) 498 WP_038562622.1 single-stranded DNA-binding protein Machinery gene
  MZK46_RS18775 rpsF 3578645..3578935 (-) 291 WP_095220687.1 30S ribosomal protein S6 -
  MZK46_RS18780 ychF 3579081..3580181 (-) 1101 WP_038562617.1 redox-regulated ATPase YchF -
  MZK46_RS18785 - 3580515..3580721 (-) 207 WP_038562615.1 DUF951 domain-containing protein -
  MZK46_RS18790 - 3580714..3581634 (-) 921 WP_038562613.1 mechanosensitive ion channel family protein -
  MZK46_RS18795 - 3581685..3582704 (-) 1020 WP_318539938.1 hypothetical protein -
  MZK46_RS18800 yyaC 3582791..3583384 (+) 594 WP_051748219.1 spore protease YyaC -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18322.84 Da        Isoelectric Point: 4.5909

>NTDB_id=680471 MZK46_RS18770 WP_038562622.1 3578135..3578632(-) (ssbA) [Terribacillus saccharophilus strain ZY-1]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTLAVNRPFSNQSGEREADFINCVVWRRPAENLANFMSKGSLVGVDGRVQTR
SFDNQEGNRVYITEIVADSVQFLETKGGSQGGGQGSSGYQNQNSNFNNNNNNNFNSNNNNNRNNDQDPFRDKGEPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=680471 MZK46_RS18770 WP_038562622.1 3578135..3578632(-) (ssbA) [Terribacillus saccharophilus strain ZY-1]
ATGTTAAATCGTGTCGTACTTGTCGGCAGATTAACCAAGGATCCGGACCTGCGTTACACACCAAATGGAGTGGCAGTTGC
CAACTTTACCTTAGCAGTAAACCGTCCTTTCTCTAATCAGTCAGGCGAACGTGAGGCAGATTTCATCAACTGTGTTGTAT
GGAGACGTCCAGCTGAAAATCTGGCGAACTTCATGAGCAAAGGAAGTCTGGTTGGCGTAGATGGCCGTGTCCAAACGAGA
AGCTTCGATAATCAAGAGGGTAACCGTGTATATATAACGGAAATTGTTGCGGATAGCGTACAATTCCTCGAGACCAAAGG
TGGCTCTCAAGGAGGCGGACAAGGTTCTTCTGGATACCAAAATCAGAACTCGAACTTCAACAACAACAATAACAATAACT
TCAATAGCAACAACAATAATAATCGAAATAACGACCAAGATCCTTTCCGTGATAAAGGTGAACCGATCGATATTTCTGAT
GATGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.571

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.242

0.412
  ssb Glaesserella parasuis strain SC1401

37.288

100

0.4