Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   MTO69_RS05235 Genome accession   NZ_CP096199
Coordinates   1108968..1109555 (+) Length   195 a.a.
NCBI ID   WP_248331760.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103968..1114555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS05215 (MTO69_05215) panP 1104354..1106006 (-) 1653 WP_248331754.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  MTO69_RS05220 (MTO69_05220) - 1106145..1106660 (-) 516 WP_248331756.1 hypothetical protein -
  MTO69_RS05225 (MTO69_05225) - 1106769..1107674 (-) 906 WP_248331758.1 lysine exporter LysO family protein -
  MTO69_RS05230 (MTO69_05230) - 1107694..1108614 (-) 921 WP_248334412.1 HDOD domain-containing protein -
  MTO69_RS05235 (MTO69_05235) tfoX 1108968..1109555 (+) 588 WP_248331760.1 TfoX/Sxy family DNA transformation protein Regulator
  MTO69_RS05240 (MTO69_05240) - 1109660..1110226 (-) 567 WP_248331762.1 hypothetical protein -
  MTO69_RS05245 (MTO69_05245) - 1110393..1110890 (-) 498 WP_248331764.1 response regulator -
  MTO69_RS05250 (MTO69_05250) - 1110887..1112839 (-) 1953 WP_248331766.1 ATP-binding protein -
  MTO69_RS05255 (MTO69_05255) - 1113014..1114279 (+) 1266 WP_248331768.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22697.94 Da        Isoelectric Point: 8.4418

>NTDB_id=680252 MTO69_RS05235 WP_248331760.1 1108968..1109555(+) (tfoX) [Vibrio sinaloensis strain YA2]
MDMTEQNFIQYVKKFGDFQKRSMFGGTGLFKEEAMFALLSNTRVFIRGGDKLDNELSQLGCEKYRHVKKQTTATVNYYDV
TELFVSNDSRMDRLVEESIEYSVSEREFKRSSANRRLRDLPNMQLTLERMVKKAGIEDVETFVQLGASEVFSKVKETYGN
DVDVKLLWKFAGAIEGIHWKLIQEPRKRQLLANCH

Nucleotide


Download         Length: 588 bp        

>NTDB_id=680252 MTO69_RS05235 WP_248331760.1 1108968..1109555(+) (tfoX) [Vibrio sinaloensis strain YA2]
ATGGATATGACAGAGCAAAATTTTATTCAATACGTTAAGAAATTTGGTGATTTTCAGAAACGTTCGATGTTTGGTGGTAC
CGGTCTGTTCAAAGAAGAGGCGATGTTTGCCTTATTGAGCAATACTCGCGTGTTTATTCGTGGTGGTGACAAACTCGATA
ATGAACTCTCTCAACTTGGTTGTGAGAAGTATCGTCATGTTAAAAAGCAAACCACTGCGACTGTAAATTACTATGATGTG
ACCGAACTTTTTGTCAGCAATGACAGCAGAATGGACCGTTTAGTCGAAGAGTCTATCGAATATTCTGTTTCGGAGCGTGA
GTTTAAACGTTCGTCGGCCAATCGTCGTTTACGCGACCTACCGAATATGCAGTTGACGTTAGAGCGTATGGTCAAAAAAG
CTGGCATAGAAGATGTTGAGACCTTCGTTCAACTTGGCGCATCGGAAGTGTTTTCCAAAGTGAAAGAGACTTATGGCAAT
GATGTTGATGTTAAGTTGCTGTGGAAGTTTGCCGGTGCTATCGAAGGCATTCACTGGAAATTGATCCAAGAACCACGCAA
ACGCCAACTGCTGGCAAATTGTCACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

70.984

98.974

0.703
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

70.984

98.974

0.703
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

70.984

98.974

0.703
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

70.984

98.974

0.703
  tfoX Vibrio cholerae strain A1552

70.984

98.974

0.703
  tfoX Vibrio campbellii strain DS40M4

69.588

99.487

0.692
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.557

99.487

0.682
  tfoX Aliivibrio fischeri ES114

60.209

97.949

0.59