Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABRG53_RS15740 Genome accession   NZ_AP017560
Coordinates   3467605..3467973 (-) Length   122 a.a.
NCBI ID   WP_126387722.1    Uniprot ID   -
Organism   Pseudanabaena sp. ABRG5-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462605..3472973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRG53_RS15730 (ABRG53_3102) - 3464519..3466864 (-) 2346 WP_126387718.1 methyl-accepting chemotaxis protein -
  ABRG53_RS15735 (ABRG53_3103) - 3466925..3467452 (-) 528 WP_126387720.1 chemotaxis protein CheW -
  ABRG53_RS15740 (ABRG53_3104) pilH 3467605..3467973 (-) 369 WP_126387722.1 response regulator transcription factor Machinery gene
  ABRG53_RS15745 (ABRG53_3105) - 3468223..3469746 (-) 1524 WP_126387724.1 YifB family Mg chelatase-like AAA ATPase -
  ABRG53_RS15750 (ABRG53_3106) - 3470151..3470435 (-) 285 WP_126387726.1 hypothetical protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13654.92 Da        Isoelectric Point: 4.9330

>NTDB_id=68000 ABRG53_RS15740 WP_126387722.1 3467605..3467973(-) (pilH) [Pseudanabaena sp. ABRG5-3]
MSTVLVVEDSVTQREMIEDLLKGSGLIVKTAGDGIEALEQMQSSCPDIVVMDIVMPRMNGYELCRRIKTDPKTERVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPQELVGTVKQLLRKA

Nucleotide


Download         Length: 369 bp        

>NTDB_id=68000 ABRG53_RS15740 WP_126387722.1 3467605..3467973(-) (pilH) [Pseudanabaena sp. ABRG5-3]
ATGAGTACAGTTCTGGTGGTTGAAGATAGTGTCACACAGAGAGAAATGATTGAAGACTTACTTAAAGGTAGTGGTTTGAT
CGTCAAAACAGCAGGTGACGGCATAGAAGCCCTAGAGCAAATGCAAAGCAGTTGCCCAGATATCGTAGTTATGGACATTG
TCATGCCTCGCATGAATGGCTATGAACTATGCCGTCGCATTAAAACTGATCCCAAAACCGAGCGCGTTCCTGTTGTAATG
TGTTCGTCTAAAGGTGAAGAATTTGATCGCTACTGGGGAATGAAGCAAGGTGCTGATGCCTATATTGCTAAACCATTTCA
GCCACAAGAGTTAGTTGGTACTGTCAAACAGTTACTTAGAAAAGCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.727

99.18

0.721
  pilG Acinetobacter baumannii strain A118

42.982

93.443

0.402
  pilL-C Synechocystis sp. PCC 6803

40

98.361

0.393
  micA Streptococcus pneumoniae Cp1015

39.344

100

0.393

Multiple sequence alignment