Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPY98_RS18530 Genome accession   NZ_AP017469
Coordinates   4096575..4097114 (-) Length   179 a.a.
NCBI ID   WP_043488863.1    Uniprot ID   A0AA91EGT8
Organism   Hafnia sp. CBA7124     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4091575..4102114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY98_RS18515 ygeW 4092584..4093771 (-) 1188 WP_040045589.1 knotted carbamoyltransferase YgeW -
  CPY98_RS18520 - 4094282..4096060 (+) 1779 WP_025798538.1 sigma-54-dependent Fis family transcriptional regulator -
  CPY98_RS18525 - 4096142..4096471 (-) 330 WP_043488866.1 hypothetical protein -
  CPY98_RS18530 ssb 4096575..4097114 (-) 540 WP_043488863.1 single-stranded DNA-binding protein Machinery gene
  CPY98_RS18535 uvrA 4097538..4100369 (+) 2832 WP_025798543.1 excinuclease ABC subunit UvrA -
  CPY98_RS18540 - 4100469..4100816 (-) 348 WP_025798545.1 MmcQ/YjbR family DNA-binding protein -
  CPY98_RS18545 - 4100809..4101237 (-) 429 WP_043488862.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  CPY98_RS18550 - 4101441..4101917 (-) 477 WP_172625160.1 DUF1097 domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19155.29 Da        Isoelectric Point: 5.2456

>NTDB_id=67972 CPY98_RS18530 WP_043488863.1 4096575..4097114(-) (ssb) [Hafnia sp. CBA7124]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSETWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEIVVNVGGTMQMLGGRQGGGAPMGGGQAQGQQGGWGQPQQPQGNQFSGGSQPAARPQNAP
AAQPQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=67972 CPY98_RS18530 WP_043488863.1 4096575..4097114(-) (ssb) [Hafnia sp. CBA7124]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAAGATCCAGAAGTCCGTTATATGCCGAATGG
TGGTGCTGTAGCCAATATTACTCTGGCCACCTCCGAGACTTGGCGCGACAAGCAAACCGGCGAACAGAAAGAAAAAACCG
AATGGCACCGTGTAGTGTTGTTTGGCAAGCTGGCAGAGGTTGCAGGTGAATATCTGCGCAAAGGTTCTCAGGTTTACATC
GAAGGTGCTTTGCAGACCCGTAAGTGGACCGATCAGGCTGGCGTTGAAAAATACACCACTGAAATCGTCGTAAACGTTGG
CGGCACCATGCAAATGCTGGGTGGACGTCAAGGCGGCGGCGCTCCTATGGGCGGCGGTCAGGCACAAGGGCAGCAGGGCG
GTTGGGGTCAGCCTCAGCAGCCACAGGGCAATCAGTTTAGCGGCGGTTCTCAGCCAGCGGCTCGCCCACAGAATGCACCG
GCAGCTCAGCCACAAAGCAATGAACCTCCAATGGATTTCGATGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.732
  ssb Glaesserella parasuis strain SC1401

55.376

100

0.575
  ssb Neisseria meningitidis MC58

48.619

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.486

Multiple sequence alignment