Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M0D46_RS12910 Genome accession   NZ_CP096143
Coordinates   2971229..2972287 (+) Length   352 a.a.
NCBI ID   WP_039409920.1    Uniprot ID   A0AB34P8V9
Organism   Xanthomonas prunicola strain CIX97     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2966229..2977287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D46_RS12900 (M0D46_12885) - 2967594..2968244 (-) 651 WP_252162201.1 hypothetical protein -
  M0D46_RS12905 (M0D46_12890) - 2968584..2971013 (-) 2430 WP_252162202.1 penicillin-binding protein 1A -
  M0D46_RS12910 (M0D46_12895) comM 2971229..2972287 (+) 1059 WP_039409920.1 pilus assembly protein PilM Machinery gene
  M0D46_RS12915 (M0D46_12900) - 2972287..2973069 (+) 783 WP_260813632.1 PilN domain-containing protein -
  M0D46_RS12920 (M0D46_12905) - 2973066..2973731 (+) 666 WP_101361968.1 type 4a pilus biogenesis protein PilO -
  M0D46_RS12925 (M0D46_12910) - 2973728..2974261 (+) 534 WP_007974439.1 pilus assembly protein PilP -
  M0D46_RS12930 (M0D46_12915) - 2974281..2976245 (+) 1965 WP_260813633.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37640.24 Da        Isoelectric Point: 4.3924

>NTDB_id=679685 M0D46_RS12910 WP_039409920.1 2971229..2972287(+) (comM) [Xanthomonas prunicola strain CIX97]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=679685 M0D46_RS12910 WP_039409920.1 2971229..2972287(+) (comM) [Xanthomonas prunicola strain CIX97]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACACTACGCGGTGGAACCATTACCACCGAACGCGGTGGTCGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTGGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCAATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCAATGCCGAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAATGTGGAGCTGCGCCAGTCCGCGCTGGAACTCGGC
GGTCTGACCGCCAAGGTGATGGATGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
GGCTGCCGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGTTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAACAGGTCTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGTCTCACCTACGAAGAA
GCCGGCCTTGCCAAGCGCCAGGGCGGTTTGCCGGAAAGCTATGAGGTCGAGGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCGGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTGGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAGGTCCAGGCCCACGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474