Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MZO21_RS11905 Genome accession   NZ_CP096120
Coordinates   2396764..2397921 (+) Length   385 a.a.
NCBI ID   WP_248103084.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2391764..2402921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS11885 (MZO21_11880) - 2392298..2394364 (-) 2067 WP_154773702.1 TonB-dependent copper receptor -
  MZO21_RS11890 (MZO21_11885) - 2394435..2394860 (-) 426 WP_248103093.1 DUF2946 family protein -
  MZO21_RS11895 (MZO21_11890) def 2394945..2395475 (-) 531 WP_248103090.1 peptide deformylase -
  MZO21_RS11900 (MZO21_11895) tsaP 2395596..2396753 (+) 1158 WP_248103087.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  MZO21_RS11905 (MZO21_11900) dprA 2396764..2397921 (+) 1158 WP_248103084.1 DNA-processing protein DprA Machinery gene
  MZO21_RS11910 (MZO21_11905) - 2397961..2398530 (+) 570 WP_248103081.1 Sua5/YciO/YrdC/YwlC family protein -
  MZO21_RS11915 (MZO21_11910) - 2398924..2399808 (-) 885 WP_248103078.1 DMT family transporter -
  MZO21_RS11920 (MZO21_11915) - 2399959..2400708 (+) 750 WP_154773708.1 AraC family transcriptional regulator -
  MZO21_RS11925 (MZO21_11920) - 2400898..2401440 (+) 543 WP_248103075.1 glutathione peroxidase -
  MZO21_RS11930 (MZO21_11925) - 2401581..2402150 (+) 570 WP_154773710.1 primosomal replication protein -
  MZO21_RS11935 (MZO21_11930) - 2402193..2402633 (+) 441 WP_154773711.1 AAA family ATPase -

Sequence


Protein


Download         Length: 385 a.a.        Molecular weight: 43289.17 Da        Isoelectric Point: 6.6153

>NTDB_id=679585 MZO21_RS11905 WP_248103084.1 2396764..2397921(+) (dprA) [Acinetobacter portensis strain JNE5]
MLSHLSKSQTETIAIWYVVQHSLSSFYKIQKHFKTLEQALKPENISQWQNLALHKNHLQRLEKFHTLEGQNDFQQLLNQI
KQSSDFVLIETDSCYPTQLLPYSDRPPILFGQGNAQTLLQPQVAIVGSRKSSTHGRQVAYDFAYYLSEKGFYINSGLAQG
IDEASHQGGLKNQRTIAVMGTGLDITYPSQNTVLRQDIIQNNGAVITEFLPTTKPLQQHFPRRNRIVSGLSLGVIVAEAT
LESGSLITAKIAAEQGKLIFAIPGHIYSEFHQGCHQLIREGAILIDHPEQVVEDLALPTQWQAKQAENQNIPSKLFEKNN
EESSDIPSHLINLYKQLDWVGQDIDQLAAILNLDIATLTAYLMELELSGLCMQQSGLYVRCRSNK

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=679585 MZO21_RS11905 WP_248103084.1 2396764..2397921(+) (dprA) [Acinetobacter portensis strain JNE5]
ATGTTGAGCCATTTATCAAAATCTCAAACTGAAACAATTGCGATCTGGTACGTGGTTCAACATTCACTATCTAGTTTTTA
TAAAATTCAAAAACATTTCAAAACCCTTGAACAAGCATTAAAACCTGAAAATATTAGCCAATGGCAAAATTTAGCATTAC
ATAAAAATCATCTTCAGCGTTTAGAAAAATTTCATACTTTAGAAGGTCAAAATGACTTTCAACAATTACTCAACCAAATT
AAGCAATCTTCAGATTTTGTTCTTATAGAAACAGATTCCTGCTATCCAACTCAACTTTTACCTTATAGCGATAGACCGCC
GATTCTTTTTGGGCAAGGCAATGCGCAAACCCTTTTACAGCCACAAGTTGCAATTGTAGGTAGTCGTAAATCGAGCACGC
ATGGTCGACAAGTTGCTTATGACTTCGCTTACTATTTAAGTGAAAAAGGTTTTTATATTAATAGTGGATTAGCACAAGGA
ATAGATGAAGCATCACATCAAGGTGGATTAAAAAATCAACGCACAATTGCTGTTATGGGTACAGGTTTAGACATTACCTA
TCCATCTCAAAATACAGTACTAAGACAAGACATTATTCAGAATAATGGTGCGGTGATTACAGAGTTTCTACCAACAACTA
AACCTTTACAACAACATTTTCCAAGAAGAAATCGAATTGTTAGCGGATTAAGCCTAGGTGTTATCGTAGCTGAAGCAACT
TTAGAGAGTGGTTCACTTATTACCGCTAAAATTGCTGCTGAACAAGGTAAATTAATTTTTGCAATTCCCGGTCATATCTA
CAGTGAGTTTCACCAAGGATGCCATCAACTTATACGAGAAGGTGCCATTTTAATTGACCATCCTGAACAAGTTGTTGAAG
ATTTAGCCTTACCAACACAATGGCAAGCGAAACAAGCAGAAAACCAAAACATACCATCAAAATTATTTGAAAAAAATAAT
GAAGAATCATCTGATATTCCAAGTCATTTGATTAATTTATATAAACAACTCGATTGGGTTGGACAAGATATAGACCAACT
TGCAGCAATACTAAATCTTGATATTGCTACGCTTACAGCTTACTTAATGGAATTAGAATTAAGTGGATTATGCATGCAAC
AATCAGGTTTATATGTACGTTGTCGTTCCAATAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

66.319

99.481

0.66

  dprA Acinetobacter baumannii D1279779

65.796

99.481

0.655

  dprA Acinetobacter baylyi ADP1

61.34

100

0.618